Factsheet for Zm00001d038002_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003333_P005
Zm00001d012030_P003
Zm00001d014656_P003
Zm00001d025668_P005
Zm00001d036494_P001
Zm00001d042340_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58575.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT5G58575.1	Zm00001d036494_P001	AT3G21175.1	21798944
AT5G58575.1	Zm00001d012030_P003	AT3G27100.1	21798944
AT5G58575.1	Zm00001d042340_P001	AT3G27100.1	21798944
AT5G58575.1	Zm00001d003333_P005	AT5G56250.1	21798944
AT5G58575.1	Zm00001d025668_P005	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18037	Sorghum	cytosol	83.03	94.76
HORVU1Hr1G060100.2	Barley	cytosol, nucleus, plastid	55.05	77.42
TraesCS1A01G223200.1	Wheat	cytosol, nucleus, plastid	54.59	75.32
TraesCS1D01G224800.1	Wheat	cytosol, nucleus, plastid	54.59	75.32
Os05t0351500-01	Rice	cytosol	61.01	71.12
TraesCS1B01G236500.1	Wheat	extracellular, golgi, plastid	55.96	58.65
GSMUA_Achr5P28120_001	Banana	mitochondrion	21.1	57.5
Bra006753.1-P	Field mustard	mitochondrion	16.05	53.03
VIT_06s0004g06970.t01	Wine grape	cytosol	40.37	52.38
PGSC0003DMT400078237	Potato	nucleus	42.2	52.27
AT5G58575.1	Thale cress	cytosol, nucleus, plastid	39.91	48.07
KRH30221	Soybean	cytosol	39.91	48.07
CDY65780	Canola	cytosol, nucleus, plastid	34.4	46.58
KRG98249	Soybean	endoplasmic reticulum, plasma membrane	35.78	40.41
Solyc06g082160.2.1	Tomato	plastid	41.74	27.08

Protein Annotations

EnsemblPlants:Zm00001d038002_P001	EnsemblPlants:Zm00001d038002_T001	EnsemblPlantsGene:Zm00001d038002	Gene3D:3.30.160.60	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:SAGA_su_Sgf11	PANTHER:PTHR15117	PANTHER:PTHR15117:SF22	PFAM:PF08209
ProteinID:AQK85455.1	SEG:seg	UniParc:UPI000221D011	UniProt:A0A1D6M2P6	MapMan:15.3.4.2.1	:

Description

CONTAINS InterPro DOMAIN/s: Sgf11 transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 29 /.../urce: NCBI BLink).

Coordinates

chr6:-:144795979..144802557

Molecular Weight (calculated)

22389.1 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.538

Length

218 amino acids

Sequence
(BLAST)

001: MGLGKTTDPS AAEHGVRQKP AGSRKREAGM SSSKDAPLSP RSQLALSCFE ELLDCAVADV ASECHRIARL GLDRSVDGEE EELRVWAARA AAAAAGGDHH
101: HPGGGGAAEE GGSKGGVDVF GQTHPAIAAD VVECMNCGRP VVAGRFAPHL EKCMGKGRRA RTKITRSSTA GRMRSSNGSV ATPYSPYSTT ANPNRASIPN
201: GVTDGGGGAR GDYSNHAP

Best Arabidopsis Sequence Match ( AT5G58575.1 )
(BLAST)

001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D

Arabidopsis Description

SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.