Factsheet for Zm00001d014656_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007536_P001
Zm00001d009013_P001
Zm00001d014656_P003
Zm00001d027518_P001
Zm00001d027974_P002
Zm00001d036494_P001
Zm00001d038002_P001
Zm00001d039271_P001
Zm00001d046662_P001
Zm00001d049167_P001
Zm00001d050298_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	Zm00001d007536_P001	AT1G01260.1	21798944
AT1G51600.1	Zm00001d009013_P001	AT1G01260.1	21798944
AT1G51600.1	Zm00001d039271_P001	AT1G01260.1	21798944
AT1G51600.1	Zm00001d027974_P002	AT2G02560.1	21798944
AT1G51600.1	Zm00001d046662_P001	AT2G02560.1	21798944
AT1G51600.1	Zm00001d049167_P001	AT2G02560.1	21798944
AT1G51600.1	Zm00001d050298_P001	AT2G02560.1	21798944
AT1G51600.1	Zm00001d027518_P001	AT2G47450.1	21798944
AT1G51600.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT1G51600.1	Zm00001d036494_P001	AT3G21175.1	21798944
AT1G51600.1	Zm00001d038002_P001	AT5G58575.1	21798944
AT3G21175.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT3G21175.1	Zm00001d036494_P001	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88899	Sorghum	nucleus	64.25	65.34
Zm00001d036494_P001	Maize	nucleus	64.25	64.25
GSMUA_Achr2P04520_001	Banana	nucleus	26.82	59.26
GSMUA_Achr3P05620_001	Banana	nucleus	39.94	57.2
GSMUA_Achr9P13870_001	Banana	nucleus	40.78	48.18
TraesCS7D01G416000.2	Wheat	nucleus	51.4	47.18
TraesCS7B01G323600.1	Wheat	nucleus	50.28	46.15
TraesCS7A01G423100.2	Wheat	nucleus	51.12	46.1
Bra014292.1-P	Field mustard	nucleus	31.01	42.69
CDY50073	Canola	nucleus	34.08	42.36
CDY46552	Canola	nucleus	30.73	42.15
VIT_09s0054g00440.t01	Wine grape	nucleus	34.64	41.47
GSMUA_Achr10P...	Banana	nucleus	36.59	40.31
AT1G51600.1	Thale cress	nucleus	33.8	40.07
Zm00001d033523_P001	Maize	nucleus	32.12	39.93
HORVU7Hr1G097840.6	Barley	nucleus	51.96	39.74
AT3G21175.1	Thale cress	nucleus	32.96	39.73
CDY19576	Canola	nucleus	32.68	39.13
CDY52949	Canola	nucleus	31.01	37.5
Zm00001d013331_P001	Maize	nucleus	28.49	36.69
Bra031258.1-P	Field mustard	nucleus	32.68	36.45
KRH44616	Soybean	extracellular, vacuole	32.68	35.03
Bra023900.1-P	Field mustard	nucleus	32.96	32.51
CDY37312	Canola	cytosol, nucleus, plastid	33.24	32.43
CDY27538	Canola	nucleus	34.08	31.61

Protein Annotations

EntrezGene:100277669	MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A1D6GUV7	ProteinID:AQK66728.1	InterPro:CCT_domain
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI00084599D5	EnsemblPlantsGene:Zm00001d014656	EnsemblPlants:Zm00001d014656_P003	EnsemblPlants:Zm00001d014656_T003	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

ZIM-transcription factor 36GATA transcription factor 24

Coordinates

chr5:-:57723307..57728010

Molecular Weight (calculated)

38132.2 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.675

Length

358 amino acids

Sequence
(BLAST)

001: MSHHDGSKPY QPRRGPERHP QPADGIAAPP PAAVAPSVEH LVAAAAEAEA LNRFAAEQQQ QLQGHEQEVG EEEEEEDEQE DEMEEEDEDE HEGQHGGIGG
101: EHVPMDADAA AAAAAAAVSQ MDPHSALVAG TVPPMATNQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGRE LSSLGGASSS APYSKRLNYP HRVASLMRFR
201: EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKPDE IAASEMASAD GSPNWALVEG RPPSAAECHH CGTNATATPM MRRGPDGPRT LCNACGLMWA
301: NKGLLRDVTK SPVPLQATQS APHLDGGQNG SAMSAPGSEL ENAAAAMTNG HESSSSGV

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.