Factsheet for Zm00001d046662_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007842_P002
Zm00001d010863_P001
Zm00001d013116_P002
Zm00001d013559_P001
Zm00001d018045_P001
Zm00001d018742_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d034361_P001
Zm00001d037221_P001
Zm00001d042193_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d010863_P001	AT3G62980.1	18550827
AT2G02560.1	Zm00001d042193_P001	AT4G02570.1	15208391
AT2G02560.1	Zm00001d042193_P001	AT4G02570.1	15208392
AT2G02560.1	Zm00001d042193_P001	AT4G02570.1	18550827
AT2G02560.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT2G02560.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT2G02560.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT2G02560.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d013116_P002	AT5G46210.1	16844902
AT2G02560.1	Zm00001d034361_P001	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050298_P001	Maize	cytosol	27.99	22.68
KRH75237	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	5.6	6.77
Solyc01g103010.2.1	Tomato	cytosol	16.54	5.34
KRH51281	Soybean	endoplasmic reticulum	16.29	5.26
KRH01878	Soybean	endoplasmic reticulum	16.03	5.17
VIT_12s0035g01840.t01	Wine grape	cytosol	16.03	5.17
Bra026586.1-P	Field mustard	cytosol	15.78	5.09
CDY09359	Canola	cytosol	15.78	5.09
AT2G02560.1	Thale cress	cytosol	15.78	5.09
CDY41685	Canola	cytosol	15.78	5.04
CDY45206	Canola	cytosol	15.52	5.02
Bra024815.1-P	Field mustard	cytosol	15.27	4.91
Zm00001d053813_P002	Maize	mitochondrion	15.78	4.88
CDY03047	Canola	cytosol	15.01	4.81
Zm00001d049167_P001	Maize	plastid	2.8	3.97
Zm00001d027974_P002	Maize	plastid	2.8	1.97

Protein Annotations

Gene3D:1.20.1560.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6P4D5	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	ProteinID:AQL04819.1	InterPro:Aquarius_N	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
PFAM:PF16399	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF272	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0008DB353E	EnsemblPlantsGene:Zm00001d046662	EnsemblPlants:Zm00001d046662_P001	EnsemblPlants:Zm00001d046662_T001	:

Description

Cullin-associated NEDD8-dissociated protein 1

Coordinates

chr9:+:101023898..101026109

Molecular Weight (calculated)

43297.8 Da

IEP (calculated)

6.156

GRAVY (calculated)

-0.089

Length

393 amino acids

Sequence
(BLAST)

001: MNETCVVPEW LHNIFLGYGN PSAAQWMNMP DLLEVIDFKD TFLDANHVQQ SFPDYQVTFI NSDGTKNLHP SPPFKIRVSK KMRESSHALP GNMNSNLTVK
101: SRNNMADGEP QKEKLIVETY IPADPGPYPQ DKPKQNSVRF TPTQIGAIIS GIQPGLTMKM YEDASQVATD AVGSIRTVAS FCAEKRVVAA YRDKCEALRK
201: QGIRSGVVGG LGYGFSFLML FFTYGLCFYV GAQFVRQGKT TFPDVFKVFF ALVLAAIGVL QASALASDAT KARDSAISIF SVLDRESKID SSSGDGMTLE
301: DVSGNIDFRN VSFKYPLRLD VQIFSDFTLR IPSGKAQLVL DPSDILALVG KSGSGKSTII ALLERLYDPD FGRISLDDVE CTQMTNLTCS YWV

Best Arabidopsis Sequence Match ( AT1G02520.1 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.