Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01878 | Soybean | endoplasmic reticulum | 98.27 | 98.19 |
| VIT_12s0035g01840.t01 | Wine grape | cytosol | 90.55 | 90.48 |
| KRH75237 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 23.25 | 87.08 |
| Solyc01g103010.2.1 | Tomato | cytosol | 85.21 | 85.21 |
| CDY09359 | Canola | cytosol | 82.33 | 82.33 |
| Bra026586.1-P | Field mustard | cytosol | 82.25 | 82.25 |
| AT2G02560.1 | Thale cress | cytosol | 82.25 | 82.12 |
| GSMUA_Achr10P... | Banana | cytosol | 82.91 | 81.97 |
| CDY45206 | Canola | cytosol | 81.43 | 81.63 |
| CDY41685 | Canola | cytosol | 82.25 | 81.38 |
| Os02t0167700-01 | Rice | plasma membrane | 81.27 | 81.2 |
| Bra024815.1-P | Field mustard | cytosol | 81.59 | 81.19 |
| CDY03047 | Canola | cytosol | 81.84 | 81.17 |
| EES06334 | Sorghum | cytosol | 81.18 | 81.05 |
| TraesCS5D01G057500.1 | Wheat | cytosol | 80.44 | 80.31 |
| TraesCS5B01G051900.1 | Wheat | cytosol | 80.36 | 80.23 |
| TraesCS2D01G036800.1 | Wheat | cytosol | 79.54 | 79.41 |
| TraesCS2B01G051000.1 | Wheat | cytosol, golgi | 79.05 | 78.92 |
| Zm00001d053813_P002 | Maize | mitochondrion | 80.28 | 76.93 |
| TraesCS5D01G419100.1 | Wheat | nucleus | 61.13 | 70.12 |
| Os02t0169800-01 | Rice | cytosol, plasma membrane | 18.0 | 69.75 |
| Zm00001d049167_P001 | Maize | plastid | 15.69 | 68.95 |
| TraesCS5A01G409400.1 | Wheat | cytosol, extracellular | 6.33 | 55.0 |
| Zm00001d050298_P001 | Maize | cytosol | 17.01 | 42.68 |
| Zm00001d027974_P002 | Maize | plastid | 16.6 | 36.27 |
| HORVU2Hr1G069270.2 | Barley | mitochondrion, plastid | 4.77 | 35.37 |
| Zm00001d046662_P001 | Maize | cytosol | 5.26 | 16.29 |
Protein Annotations
| EntrezGene:100806720 | MapMan:19.2.2.8.1.5 | EMBL:ACUP02004733 | InterPro:ARM-type_fold | EnsemblPlantsGene:GLYMA_07G272400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010265 | GO:GO:0016043 | GO:GO:0016567 |
| GO:GO:0019538 | UniProt:K7L432 | EnsemblPlants:KRH51281 | ProteinID:KRH51281 | ProteinID:KRH51281.1 | PFAM:PF08623 |
| PANTHER:PTHR12696 | PANTHER:PTHR12696:SF0 | SUPFAM:SSF48371 | InterPro:TATA-bd_TIP120 | UniParc:UPI0002955206 | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:+:44450826..44463573
Molecular Weight (calculated)
134328.0 Da
IEP (calculated)
5.849
GRAVY (calculated)
0.006
Length
1217 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANLALTSIL EKMTGKDKDY RYMATSDLLN ELSKATFKAD ADLEVKLTNI IIQQLDDAAG DVSGLAVKCL APLVRKVSEV RVVEMTSKLC DKLLNGKDQH
0101: RDIASIALKT VVAEVSTQSL AQSILQTLTP QLIRGITGPG MGSEIKCESL DILCDVLHKF GNLMAADHEL LLSSLLSQLS SNQASVRKKT VACIASLSSS
0201: LSDDLLAKAT VEVVTNLKNK VAKSEMIRTN IQMIGALSRA VGYRFGPHLG DTVPVLINYC TNASENDEEL REYSLQALES FLLRCPRDIS VYCDEILHLT
0301: LEYLSYDPNF TDNMEEDTDD EGLEEEEDDE SANEYTDDED VSWKVRRAAA KCLAALIVSR PEILSKLYDE ACPKLIDRFK EREENVKMDV FNTFIELLRQ
0401: TGNVTKGQTD ADMSPRWLLK QEVSKIVKSI NRQLREKSIK TKVGAFSVLK ELVVVLPNCL ADHIGSLIPG IEKALNDKSS TSNLKIEALT FTRLVLSSHS
0501: PDVFHPYIKA LSAPVLSAVG ERYYKVTAEA LRVCGELVRV VRPNIEGSGF DFRPYVHPIY NGIMSRLINQ DQDQEVKECA ISCMGLIVST FGDHLNAELP
0601: ACLPVLVDRM GNEITRLTAV KAFAVIAASP LRVDLSCVLE HVVAELTAFL RKANRALRQA TLGTLNSLIV AYGDKIVLSA YEVIIVELSG LISDSDLHMT
0701: ALALELCCTL MGDKRSNQSI GLAVRNKVLP QALTLIKSSL LQGQALSALQ NFFAALVYSA NTSFDSLLES LLACAKPSPQ SGGIAKQALH SIAQCVAVLC
0801: LAAGDQKCSS TVKMLTDILK DDSSSNSAKQ HLALLCLGEI GRRKDLSTHA HIENIVIESF QSPFEEIKSA ASYALGNIAV GNLPKYLPFI LDQIDNQQKK
0901: QYLLLHSLKE VIVRQSVDKA EFQESSVEKI LNLLFNHCES EEEGVRNVVA ECLGKIALIE PVKLIPALKV RRTSPAAFTR ATVVIAVKYS IVERPEKIDE
1001: IIYPEISSFL MLIKDNDRHV RRAAVLAIST FAHNKPNLIK GLLPDLLPLL YDQTIVKQEL IRTVDLGPFK HIVDDGLELR KAAFECVDTL LDSCLDQVNP
1101: SSFIVPYLKS GLDDHYDVKM PCHLILSKLA DKCPSAVLAV LDSLVDPLQK TINFKPKQDA VKQEVDRNED MIRSALRAIA SLNRISGGDC SVKFKNLMNE
1201: ISKSQTLWDK YYSIRNE
0101: RDIASIALKT VVAEVSTQSL AQSILQTLTP QLIRGITGPG MGSEIKCESL DILCDVLHKF GNLMAADHEL LLSSLLSQLS SNQASVRKKT VACIASLSSS
0201: LSDDLLAKAT VEVVTNLKNK VAKSEMIRTN IQMIGALSRA VGYRFGPHLG DTVPVLINYC TNASENDEEL REYSLQALES FLLRCPRDIS VYCDEILHLT
0301: LEYLSYDPNF TDNMEEDTDD EGLEEEEDDE SANEYTDDED VSWKVRRAAA KCLAALIVSR PEILSKLYDE ACPKLIDRFK EREENVKMDV FNTFIELLRQ
0401: TGNVTKGQTD ADMSPRWLLK QEVSKIVKSI NRQLREKSIK TKVGAFSVLK ELVVVLPNCL ADHIGSLIPG IEKALNDKSS TSNLKIEALT FTRLVLSSHS
0501: PDVFHPYIKA LSAPVLSAVG ERYYKVTAEA LRVCGELVRV VRPNIEGSGF DFRPYVHPIY NGIMSRLINQ DQDQEVKECA ISCMGLIVST FGDHLNAELP
0601: ACLPVLVDRM GNEITRLTAV KAFAVIAASP LRVDLSCVLE HVVAELTAFL RKANRALRQA TLGTLNSLIV AYGDKIVLSA YEVIIVELSG LISDSDLHMT
0701: ALALELCCTL MGDKRSNQSI GLAVRNKVLP QALTLIKSSL LQGQALSALQ NFFAALVYSA NTSFDSLLES LLACAKPSPQ SGGIAKQALH SIAQCVAVLC
0801: LAAGDQKCSS TVKMLTDILK DDSSSNSAKQ HLALLCLGEI GRRKDLSTHA HIENIVIESF QSPFEEIKSA ASYALGNIAV GNLPKYLPFI LDQIDNQQKK
0901: QYLLLHSLKE VIVRQSVDKA EFQESSVEKI LNLLFNHCES EEEGVRNVVA ECLGKIALIE PVKLIPALKV RRTSPAAFTR ATVVIAVKYS IVERPEKIDE
1001: IIYPEISSFL MLIKDNDRHV RRAAVLAIST FAHNKPNLIK GLLPDLLPLL YDQTIVKQEL IRTVDLGPFK HIVDDGLELR KAAFECVDTL LDSCLDQVNP
1101: SSFIVPYLKS GLDDHYDVKM PCHLILSKLA DKCPSAVLAV LDSLVDPLQK TINFKPKQDA VKQEVDRNED MIRSALRAIA SLNRISGGDC SVKFKNLMNE
1201: ISKSQTLWDK YYSIRNE
0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
Arabidopsis Description
CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.