Factsheet for Bra024815.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000874.1-P
Bra003518.1-P
Bra007720.1-P
Bra014378.1-P
Bra017569.1-P
Bra018126.1-P
Bra022023.1-P
Bra025031.1-P
Bra026812.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	Bra026812.1-P	AT1G14687.1	21798944
AT2G02560.1	Bra018126.1-P	AT3G47620.1	21798944
AT2G02560.1	Bra003518.1-P	AT3G62980.1	18550827
AT2G02560.1	Bra007720.1-P	AT3G62980.1	18550827
AT2G02560.1	Bra014378.1-P	AT3G62980.1	18550827
AT2G02560.1	Bra000874.1-P	AT4G02570.1	15208391
AT2G02560.1	Bra036257.1-P	AT4G02570.1	15208391
AT2G02560.1	Bra000874.1-P	AT4G02570.1	15208392
AT2G02560.1	Bra036257.1-P	AT4G02570.1	15208392
AT2G02560.1	Bra000874.1-P	AT4G02570.1	18550827
AT2G02560.1	Bra036257.1-P	AT4G02570.1	18550827
AT2G02560.1	Bra000638.1-P	AT4G08150.1	21798944
AT2G02560.1	Bra017569.1-P	AT5G46210.1	16844902
AT2G02560.1	Bra022023.1-P	AT5G46210.1	16844902
AT2G02560.1	Bra025031.1-P	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45206	Canola	cytosol	97.71	98.43
Bra026586.1-P	Field mustard	cytosol	95.5	95.97
AT2G02560.1	Thale cress	cytosol	94.19	94.5
VIT_12s0035g01840.t01	Wine grape	cytosol	81.28	81.61
KRH51281	Soybean	endoplasmic reticulum	81.19	81.59
KRH01878	Soybean	endoplasmic reticulum	81.11	81.44
Solyc01g103010.2.1	Tomato	cytosol	78.99	79.38
GSMUA_Achr10P...	Banana	cytosol	76.86	76.36
EES06334	Sorghum	cytosol	75.72	75.96
HORVU5Hr1G011280.4	Barley	cytosol, endoplasmic reticulum, peroxisome	39.49	75.94
Os02t0167700-01	Rice	plasma membrane	75.14	75.45
TraesCS5D01G057500.1	Wheat	cytosol	74.73	74.98
TraesCS5A01G046900.1	Wheat	golgi	74.65	74.9
TraesCS5B01G051900.1	Wheat	cytosol	74.57	74.82
HORVU2Hr1G005650.6	Barley	cytosol	74.0	74.24
TraesCS2D01G036800.1	Wheat	cytosol	73.92	74.16
TraesCS2A01G037800.2	Wheat	cytosol, unclear	73.83	74.08
TraesCS2B01G051000.1	Wheat	cytosol, golgi	73.67	73.91
KRH75237	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	19.46	73.23
HORVU0Hr1G010280.1	Barley	plastid	6.05	69.81
TraesCS5D01G419100.1	Wheat	nucleus	57.65	66.45
HORVU5Hr1G059250.1	Barley	cytosol	3.76	65.71
Os02t0169800-01	Rice	cytosol, plasma membrane	16.6	64.65
Zm00001d049167_P001	Maize	plastid	14.31	63.18
HORVU1Hr1G041480.1	Barley	cytosol	4.58	62.92
HORVU7Hr1G036210.1	Barley	endoplasmic reticulum, plastid	3.52	61.43
TraesCS5A01G409300.1	Wheat	cytosol	48.0	47.0
HORVU1Hr1G041490.1	Barley	cytosol	1.96	42.11
Zm00001d050298_P001	Maize	cytosol	15.62	39.38
Zm00001d027974_P002	Maize	plastid	16.76	36.8
Zm00001d046662_P001	Maize	cytosol	4.91	15.27

Protein Annotations

EnsemblPlants:Bra024815.1	EnsemblPlants:Bra024815.1-P	EnsemblPlantsGene:Bra024815	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold
InterPro:TATA-bd_TIP120	ncoils:Coil	PANTHER:PTHR12696	PANTHER:PTHR12696:SF0	PFAM:PF08623	SEG:seg
SUPFAM:SSF48371	UniParc:UPI000253F8CA	UniProt:M4E7Q9	MapMan:19.2.2.8.1.5	:	:

Description

AT2G02560 (E=0.0) CAND1, ATCAND1, ETA2, TIP120, HVE | CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding

Coordinates

chrA06:-:23579741..23586654

Molecular Weight (calculated)

135641.0 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.007

Length

1223 amino acids

Sequence
(BLAST)

0001: MANLQLSGII EKMTGKDKDY RYMATSDLLN ELNKDSFKLD SDLEMRLSSI ILQQLDDVSG LAVKCLAPLV KKVGEERVVE MTNNLCDKLL HGKDQHRDTA
0101: SIALRTVVAQ VAPSLAPSIL VTLTPLMIGG ISGQEMSQGI KCECLEIMCD VVQKYGSLMA DDHEKLLNTL LLQLDCNQAT VRKKTVTCIA SLASSLSDDL
0201: LAKATVKVVK NLSNKNAKSE ITRTNIQMIG AISRAVGYRF GTHLGNTVPV LIDYCTSASE NDEELREYSL QALESFLLRC PRDISPYCDE ILNLTLEYIC
0301: YDPNFTDNMD EDTDGETPED EDDDESANEY TDDEDASWKV RRAAAKCLAG LIVSRSEMIS KVYQEACPKL IDRFKEREEN VKMDVFNTFI DLLRQTGNVT
0401: KGQTDTDESR QIFCTLSLHH PKWLLKQEVS KIVKSINRQL REKSVKTKVG AFSVLRELVV VLPDCLADHI GSLVPGIERA LNDKSSTSNL KIEALVFTKL
0501: VLASHAPPVF HPYIKALSSP VLAAVGERYY KVTAEALRVC GELVRVVRPS TQSMGFDFKP FVHPIYNAIM SRLTNQDQDQ EVKECAITCM GLVISTFGDE
0601: LRKELPSCLP VLVDRMGNEI TRLTAVKAFA VIATSPLHID LSCVLVNLIA ELTGFLRKAN RVLRQATLIT MNTLVTAYGD KIVSDAYEVI VVELSSLISV
0701: SDLHMTALAL ELCCTLMTGK SCSENISLAV RNKVLPQAIT LVKSPLLQGQ ALLALQGFFE ALVYHANTSF YTLLDSLLSC AKPSPQSGGV PKQALYSIAQ
0801: CVAVLCLAAG DKNCSSTVKM LMEILKDDSG TNTAKQHLAL LSLGEIGRRK DLSAHAGIET IVIESFQSPF EEIKSAASYA LGNIAVGNLP NYLPFILNQI
0901: DNQQKKQYIL LHSLKEVIVR QSVDKADFQN CSVEKILALL FNHCESEEEG VRNVVAECLG KMALIEPEKL VPALKVRTTS QAAFTRATVV TAVKYSVVER
1001: PEKLDEIIFP EISSFLMLIK DGDRHVRRAA VSALSTFAHY KPNLIKGLLP ELLPLLYDQT VIKKELIRTV DLGPFKHVVD DGLELRKAAF ECVFTLLDSC
1101: LDQLNPSSFI IPFLKSGLED HYDLKMLCHL ILSLLADKCP SAVLAVLDSL VEPLQKTINF KPKQDAVKQE HDRNEDMIRS ALRAISSLDR ISGVDYSHKF
1201: KSLMADMKRS ERLWGKYQTI RNE

Best Arabidopsis Sequence Match ( AT2G02560.2 )
(BLAST)

0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE

Arabidopsis Description

CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.