Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G059250.1 | Barley | cytosol | 5.58 | 97.14 |
| TraesCS2A01G037800.2 | Wheat | cytosol, unclear | 96.88 | 96.88 |
| TraesCS2D01G036800.1 | Wheat | cytosol | 96.72 | 96.72 |
| TraesCS2B01G051000.1 | Wheat | cytosol, golgi | 96.55 | 96.55 |
| HORVU5Hr1G011280.4 | Barley | cytosol, endoplasmic reticulum, peroxisome | 49.47 | 94.81 |
| Os02t0167700-01 | Rice | plasma membrane | 91.22 | 91.3 |
| HORVU1Hr1G041490.1 | Barley | cytosol | 4.27 | 91.23 |
| HORVU1Hr1G041480.1 | Barley | cytosol | 6.64 | 91.01 |
| HORVU0Hr1G010280.1 | Barley | plastid | 7.88 | 90.57 |
| EES06334 | Sorghum | cytosol | 90.16 | 90.16 |
| Zm00001d053813_P002 | Maize | mitochondrion | 89.34 | 85.75 |
| HORVU7Hr1G036210.1 | Barley | endoplasmic reticulum, plastid | 4.76 | 82.86 |
| Os02t0169800-01 | Rice | cytosol, plasma membrane | 21.25 | 82.48 |
| GSMUA_Achr10P... | Banana | cytosol | 82.61 | 81.8 |
| VIT_12s0035g01840.t01 | Wine grape | cytosol | 80.23 | 80.3 |
| Solyc01g103010.2.1 | Tomato | cytosol | 77.6 | 77.73 |
| AT2G02560.1 | Thale cress | cytosol | 75.31 | 75.31 |
| CDY09359 | Canola | cytosol | 75.14 | 75.27 |
| Bra026586.1-P | Field mustard | cytosol | 75.14 | 75.27 |
| CDY41685 | Canola | cytosol | 74.98 | 74.31 |
| CDY45206 | Canola | cytosol | 74.0 | 74.3 |
| CDY03047 | Canola | cytosol | 74.49 | 74.0 |
| Bra024815.1-P | Field mustard | cytosol | 74.24 | 74.0 |
| HORVU2Hr1G069270.2 | Barley | mitochondrion, plastid | 5.66 | 42.07 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G005650.6 | EnsemblPlantsGene:HORVU2Hr1G005650 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:TATA-bd_TIP120 |
| PANTHER:PTHR12696 | PANTHER:PTHR12696:SF0 | PFAM:PF08623 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI000294D1A7 |
| UniProt:M0YC48 | MapMan:19.2.2.8.1.5 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:12233039..12243969
Molecular Weight (calculated)
134185.0 Da
IEP (calculated)
6.189
GRAVY (calculated)
-0.019
Length
1219 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANTNITGIL EKMTGKDKDY RYMATSDLLS ELNKESFKAD QDLESKLTNI VLQQLEDASG DVSGLAVKCL APLVKKVSEE RVVEMTDKLC DKLLNGKDQH
0101: RDTASIALKA VIVEVTTASL SEKILVSLAP QLIKGVTSGK SAEIKCECLD ILGDVLHRFG NVITKDHAYM LTALLAQLSS TQASVRKKSV SCIASLAPCL
0201: SDDLLAKGTL EVVKLLKNRK AKSDITRTNI QMIGALSRSV GYRFGPHLAE AVPLLINYCT SASENDEELR EYSLQALESF MLRCPRDISP YCEGILNLAL
0301: EYVSYDPNFT DSMDEDTDDE VQDEEDDDES ADEYTDDEDA SWKVRRASAK CISAIIVSRP QMLSKMYQEA CPKLVDRFRE REENVKMDIF NTFIELLRQT
0401: GNVTKGQGDI DESSPRWLLK QEVPKIVKSI NRQLREKSIK TKVGAFSVLK ELVVVLPDCL ADQFGSLVPG IEKALNDKSS TSNLKIEALA FTRIVMASHS
0501: PSVFHPYIQA LSGPILSAIG DRYYKVTAEA LRVCGELVRV LRPNFEAHSI DFRPYISPIY KAILARLANQ DQDQEVKECA ISCMSLVIAT FGDGLQRELP
0601: ACLPILVDRM GNEITRLTAV KAFAVIANSP LRIDLSCVLD HVVSELTAFL RKANRALRQA TLGTLNSLVV TYGSQIGSSS YETILTELST LISDVDLHMA
0701: ALALELCCTI MVDRRSVKNV GLAVIHKVLP EALTLIRSAL LQGQALQALQ KFFAALVQSA NISFETLLNS LISTAKPSQS GGLSKQALFS IAQCVAVLCL
0801: AAGDKKCAST IEMLKGILND DSSTNSAKQH MALLCLGEIG RRKDLSNHDQ IENIVIESFQ SPFEEIKSAA SYALGNIAVG NLSKYLPFIL DQIDNQQKKQ
0901: YLLLHSLKEV IARQSVDHTG QSELQDSNIL KILALLFNHC ESEEEGVRNV VAECLGKIAL IEPNKLIPAL KERTSSPAAN TRATVAIAIK YSIVERTGKI
1001: DAILYSEIST FLMLIKDSDR HVRRAAVLAL STAAHNKPNL IKRLLPELLP LLYDQTVVKQ ELIRTVDLGP FKHVVDDGLE LRKAAFECVD TLLDSCLDQV
1101: NPSAFIVPFL LSGLGDHYDV KMPCHLILSK LADKCPSAVL AVLDSLVEPL EKTIVHKPKG DAVKQEIDRN EDLIRSALRA IAALNRISGS DYSMKLKKLM
1201: SKITSTSSLA EKYNSVRSE
0101: RDTASIALKA VIVEVTTASL SEKILVSLAP QLIKGVTSGK SAEIKCECLD ILGDVLHRFG NVITKDHAYM LTALLAQLSS TQASVRKKSV SCIASLAPCL
0201: SDDLLAKGTL EVVKLLKNRK AKSDITRTNI QMIGALSRSV GYRFGPHLAE AVPLLINYCT SASENDEELR EYSLQALESF MLRCPRDISP YCEGILNLAL
0301: EYVSYDPNFT DSMDEDTDDE VQDEEDDDES ADEYTDDEDA SWKVRRASAK CISAIIVSRP QMLSKMYQEA CPKLVDRFRE REENVKMDIF NTFIELLRQT
0401: GNVTKGQGDI DESSPRWLLK QEVPKIVKSI NRQLREKSIK TKVGAFSVLK ELVVVLPDCL ADQFGSLVPG IEKALNDKSS TSNLKIEALA FTRIVMASHS
0501: PSVFHPYIQA LSGPILSAIG DRYYKVTAEA LRVCGELVRV LRPNFEAHSI DFRPYISPIY KAILARLANQ DQDQEVKECA ISCMSLVIAT FGDGLQRELP
0601: ACLPILVDRM GNEITRLTAV KAFAVIANSP LRIDLSCVLD HVVSELTAFL RKANRALRQA TLGTLNSLVV TYGSQIGSSS YETILTELST LISDVDLHMA
0701: ALALELCCTI MVDRRSVKNV GLAVIHKVLP EALTLIRSAL LQGQALQALQ KFFAALVQSA NISFETLLNS LISTAKPSQS GGLSKQALFS IAQCVAVLCL
0801: AAGDKKCAST IEMLKGILND DSSTNSAKQH MALLCLGEIG RRKDLSNHDQ IENIVIESFQ SPFEEIKSAA SYALGNIAVG NLSKYLPFIL DQIDNQQKKQ
0901: YLLLHSLKEV IARQSVDHTG QSELQDSNIL KILALLFNHC ESEEEGVRNV VAECLGKIAL IEPNKLIPAL KERTSSPAAN TRATVAIAIK YSIVERTGKI
1001: DAILYSEIST FLMLIKDSDR HVRRAAVLAL STAAHNKPNL IKRLLPELLP LLYDQTVVKQ ELIRTVDLGP FKHVVDDGLE LRKAAFECVD TLLDSCLDQV
1101: NPSAFIVPFL LSGLGDHYDV KMPCHLILSK LADKCPSAVL AVLDSLVEPL EKTIVHKPKG DAVKQEIDRN EDLIRSALRA IAALNRISGS DYSMKLKKLM
1201: SKITSTSSLA EKYNSVRSE
0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
Arabidopsis Description
CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.