Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G187600.1 | Wheat | cytosol | 97.0 | 97.0 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 90.0 | 96.77 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 72.25 | 76.25 |
| EER88112 | Sorghum | nucleus | 74.75 | 75.89 |
| Os06t0226700-01 | Rice | nucleus | 71.25 | 73.64 |
| HORVU6Hr1G075650.1 | Barley | nucleus | 71.5 | 71.14 |
| Zm00001d044836_P001 | Maize | nucleus | 61.5 | 68.91 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 41.0 | 60.29 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 38.75 | 57.84 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 44.0 | 47.83 |
| CDY36943 | Canola | nucleus | 21.5 | 45.5 |
| Solyc03g116320.2.1 | Tomato | nucleus | 44.75 | 43.77 |
| PGSC0003DMT400001613 | Potato | nucleus | 45.0 | 43.48 |
| PGSC0003DMT400083148 | Potato | nucleus | 44.0 | 42.93 |
| Solyc06g070900.2.1 | Tomato | nucleus | 44.5 | 42.79 |
| KRH56919 | Soybean | nucleus | 43.25 | 41.59 |
| KRH63357 | Soybean | nucleus | 41.0 | 41.21 |
| KRH03466 | Soybean | nucleus | 42.5 | 41.16 |
| KRH54542 | Soybean | nucleus | 41.5 | 40.69 |
| CDY24170 | Canola | nucleus | 24.25 | 39.92 |
| Bra018126.1-P | Field mustard | nucleus | 40.25 | 34.55 |
| AT3G47620.1 | Thale cress | nucleus | 42.0 | 34.36 |
| HORVU2Hr1G090640.1 | Barley | plastid | 16.5 | 32.67 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 21.75 | 32.58 |
| HORVU5Hr1G035980.1 | Barley | cytosol | 29.0 | 30.45 |
| HORVU6Hr1G059930.1 | Barley | plastid | 16.5 | 28.57 |
| HORVU4Hr1G019380.1 | Barley | nucleus, plastid | 24.75 | 25.78 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 16.25 | 23.81 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 20.25 | 21.6 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 23.25 | 20.0 |
Protein Annotations
| MapMan:15.5.19 | EMBL:AK369615 | ncoils:Coil | UniProt:F2E0E4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:HORVU7Hr1G038130 | EnsemblPlants:HORVU7Hr1G038130.1 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF70 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002007920 | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E0E4]
Coordinates
chrchr7H:-:94003743..94005994
Molecular Weight (calculated)
41721.6 Da
IEP (calculated)
8.751
GRAVY (calculated)
-0.553
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVTGDAGGG RRPNFPLQLL EKKEEHPCSI SPAAGLGTNG SATGELQVRK AAPPKRTTSK DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE
101: WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSMLSTI PAHLRAAGLP GSRFGGGPRA DAWDRFVGLG FGGGLESPAS TTTSSSSPLL LSFHSGSVGL
201: DVSPSSSAAA ASTELSRKRR WEQEMQQQQQ QHHQHQQQQQ QQYQQQMAGY TQSQMPGTVW MVPTSNTQGA VAAPAGGGES IWTFPQPGSG GGGSATVYRG
301: VPSGLHFMNI PAPMAVHAQQ LGLGQAGGGG SAAASEGHMG ILAALNAYRG QHASASEVTV AGHNGTAEGT THHQHQNQHQ HQHLQHGGGE PNESMSGSDS
101: WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSMLSTI PAHLRAAGLP GSRFGGGPRA DAWDRFVGLG FGGGLESPAS TTTSSSSPLL LSFHSGSVGL
201: DVSPSSSAAA ASTELSRKRR WEQEMQQQQQ QHHQHQQQQQ QQYQQQMAGY TQSQMPGTVW MVPTSNTQGA VAAPAGGGES IWTFPQPGSG GGGSATVYRG
301: VPSGLHFMNI PAPMAVHAQQ LGLGQAGGGG SAAASEGHMG ILAALNAYRG QHASASEVTV AGHNGTAEGT THHQHQNQHQ HQHLQHGGGE PNESMSGSDS
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.