Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G093700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 78.23 | 87.78 |
| TraesCS4D01G211400.1 | Wheat | cytosol | 77.42 | 86.88 |
| TraesCS4B01G210700.2 | Wheat | cytosol | 76.41 | 86.53 |
| Os03t0268100-01 | Rice | nucleus | 67.14 | 74.83 |
| EER92496 | Sorghum | nucleus | 66.13 | 74.38 |
| Zm00001d047834_P004 | Maize | cytosol | 61.49 | 64.62 |
| Zm00001d028569_P002 | Maize | cytosol | 64.92 | 55.42 |
| GSMUA_Achr2P16570_001 | Banana | nucleus | 48.99 | 55.35 |
| CDY22263 | Canola | cytosol | 10.48 | 52.53 |
| VIT_06s0004g05490.t01 | Wine grape | nucleus | 45.36 | 50.34 |
| CDY02864 | Canola | extracellular, golgi, vacuole | 32.66 | 49.54 |
| AT5G59210.1 | Thale cress | nucleus | 43.35 | 49.54 |
| KRH23112 | Soybean | nucleus | 40.73 | 46.65 |
| KRH10215 | Soybean | cytosol | 40.32 | 46.19 |
| Solyc09g055760.2.1 | Tomato | nucleus | 39.72 | 44.67 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G060500.11 | EnsemblPlantsGene:HORVU4Hr1G060500 | ncoils:Coil | SEG:seg | UniParc:UPI000B46508D | UniProt:A0A287P985 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:508168440..508171856
Molecular Weight (calculated)
56537.4 Da
IEP (calculated)
5.927
GRAVY (calculated)
-0.805
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: PAHDTSIVVV SPVSPTSPTA AIAEPEELRV PPFRNPPNPP ELPPRPIHCS PRWSLTTPPG AAAPWRRSGR RGRPRGCSSS KRPPRPRPTA TLTGTKEPRQ
101: RLLARVQQLE NGNLELEREN QMLMSKFAEK EVEKDSLVSR LNDLEKNVVP SLKKSLNDIS LEKDAAVIAK EDALAQLRSM KKRLREAEEE QYRAEEDSAS
201: LRAQLNTLQQ QVMSNSYSGY AVGTSSEQTL AMEKEIQDLQ AQLKQESLLR QQEQQKLAEE FLLRQQDQQR LAEEQSRTTS LEVEKREMEE KIAVLTKKSS
301: AEEASEFAVR KAFSMQDREK LENQLHDMAL MVERLEGSRQ KLLMEIDSQS LEIENLFEEN SVLSTSYQEA MSVTMQWENQ VKDCLKQNEE LRLHLEKLRI
401: EQAKLLKTNN TRAQLDGQTE TSIPPELVTE NLSLKDELVK EHSRSEGLSA EIMKLSAQLR KAVQAQNNLT RLYRPVLKDI EGNLMKMKQE TYATIL
101: RLLARVQQLE NGNLELEREN QMLMSKFAEK EVEKDSLVSR LNDLEKNVVP SLKKSLNDIS LEKDAAVIAK EDALAQLRSM KKRLREAEEE QYRAEEDSAS
201: LRAQLNTLQQ QVMSNSYSGY AVGTSSEQTL AMEKEIQDLQ AQLKQESLLR QQEQQKLAEE FLLRQQDQQR LAEEQSRTTS LEVEKREMEE KIAVLTKKSS
301: AEEASEFAVR KAFSMQDREK LENQLHDMAL MVERLEGSRQ KLLMEIDSQS LEIENLFEEN SVLSTSYQEA MSVTMQWENQ VKDCLKQNEE LRLHLEKLRI
401: EQAKLLKTNN TRAQLDGQTE TSIPPELVTE NLSLKDELVK EHSRSEGLSA EIMKLSAQLR KAVQAQNNLT RLYRPVLKDI EGNLMKMKQE TYATIL
001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASVS ESGQKVFSVE DKEKLEKQLH DMAVALERLE SSRQKLLMEI DNQSSEIEKL
301: FEENSNLSAS YQESINISNQ WENQVKECLK QNVELREVLD KLRTEQAGSF SRGPSEFEAN GSHGTDTLSL KGELAKEQSR AESLSAQVLQ LSAQLQQATQ
401: AYNGLMRIYK PVLRNIESSL IKLKQDGSVT VAQ
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASVS ESGQKVFSVE DKEKLEKQLH DMAVALERLE SSRQKLLMEI DNQSSEIEKL
301: FEENSNLSAS YQESINISNQ WENQVKECLK QNVELREVLD KLRTEQAGSF SRGPSEFEAN GSHGTDTLSL KGELAKEQSR AESLSAQVLQ LSAQLQQATQ
401: AYNGLMRIYK PVLRNIESSL IKLKQDGSVT VAQ
Arabidopsis Description
AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.