Factsheet for VIT_06s0004g05490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05790.t01
VIT_04s0008g05610.t01
VIT_04s0023g02740.t01
VIT_06s0004g05490.t01
VIT_08s0007g08550.t01
VIT_09s0002g01440.t01
VIT_15s0021g02140.t01
VIT_17s0000g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59210.1	VIT_08s0007g08550.t01	AT1G60080.1	21798944
AT5G59210.1	VIT_01s0011g05790.t01	AT1G68060.1	21798944
AT5G59210.1	VIT_09s0002g01440.t01	AT1G72630.1	21798944
AT5G59210.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT5G59210.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944
AT5G59210.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT5G59210.1	VIT_04s0023g02740.t01	AT4G36290.1	21798944
AT5G59210.1	VIT_06s0004g05490.t01	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G59210.1	Thale cress	nucleus	65.32	67.28
KRH10215	Soybean	cytosol	63.76	65.82
KRH23112	Soybean	nucleus	62.86	64.9
Solyc09g055760.2.1	Tomato	nucleus	62.64	63.49
CDY22263	Canola	cytosol	13.65	61.62
GSMUA_Achr2P16570_001	Banana	nucleus	57.72	58.77
Os03t0268100-01	Rice	nucleus	55.93	56.18
TraesCS4A01G093700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.81	55.43
TraesCS4D01G211400.1	Wheat	cytosol	54.81	55.43
TraesCS4B01G210700.2	Wheat	cytosol	53.69	54.79
CDY02864	Canola	extracellular, golgi, vacuole	40.04	54.74
EER92496	Sorghum	nucleus	53.91	54.65
Zm00001d047834_P004	Maize	cytosol	51.45	48.73
HORVU4Hr1G060500.11	Barley	cytosol, nucleus	50.34	45.36
Zm00001d028569_P002	Maize	cytosol	53.91	41.48

Protein Annotations

ArrayExpress:VIT_06s0004g05490	EMBL:FN594951	EnsemblPlants:VIT_06s0004g05490.t01	EnsemblPlantsGene:VIT_06s0004g05490	EntrezGene:100243231	EntrezGene:LOC100243231
ncoils:Coil	PANTHER:PTHR45393	ProteinID:CBI16055	ProteinID:CBI16055.3	RefSeq:XP_002282726	RefSeq:XP_002282726.1
SEG:seg	TIGR:TC53898	TIGR:TC60816	unigene:Vvi.4651	UniParc:UPI000198375B	UniProt:D7SK79
wikigene:100243231	wikigene:LOC100243231	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6:+:6337057..6342373

Molecular Weight (calculated)

50130.2 Da

IEP (calculated)

5.148

GRAVY (calculated)

-0.750

Length

447 amino acids

Sequence
(BLAST)

001: MESHHATLGR RTLEEIRQKR AAERLVKAAS GPDLSQVLNP NDNMGIKQSD SSNRLSENDV SDLVSQLKGL HKRNAELEED NKKLNSRLQA KEVENDVLQK
101: RLNDLEQNSI PSLRKALKDV AIEKDAAVVA REDLSAQLRT VKRRLKEAEE EQYRAEEDAA ALRAELNSIQ QQAMMGTLGS ITSMGNSPDH IQALERELAS
201: LKSQLQQESL LRHQEQQRLA EEQAQNSTLM SEKQGLEEKI AAITKKTSDA ASEKAAWETF SLEDKEKLEK QLHDMAVAVE RLESSRQKLL MEIDSQSSVI
301: ESLFEENSNL SSSYQDAMGV VVHWENQVKD CLKQNEELRG MLNKLRAEQT SLLPNNEIPF SLSEGNKDGG NNTGPQAYTT EILFLKGQLA KEQSRVEALS
401: AEVMQLGAQL QQATHAYNGL ARLYKPVLQN IERSLIKMKQ DGPVTVQ

Best Arabidopsis Sequence Match ( AT5G59210.1 )
(BLAST)

001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ

Arabidopsis Description

AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.