Factsheet for VIT_17s0000g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00260.t01
VIT_00s0309g00050.t01
VIT_00s0309g00090.t01
VIT_00s1455g00010.t01
VIT_02s0012g01320.t01
VIT_05s0020g00690.t01
VIT_05s0020g01750.t01
VIT_09s0002g00890.t01
VIT_11s0016g00710.t01
VIT_13s0019g03380.t01
VIT_14s0083g00450.t01
VIT_17s0000g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48500.1	VIT_11s0016g00710.t01	AT1G19180.1	19309455
AT1G48500.1	VIT_02s0012g01320.t01	AT1G32640.1	19309455
AT1G48500.1	VIT_17s0000g02230.t01	AT1G48500.1	19309455
AT1G48500.1	VIT_17s0000g02230.t01	AT3G17860.1	19309455
AT3G17860.1	VIT_09s0002g00890.t01	AT1G17380.1	19309455
AT3G17860.1	VIT_11s0016g00710.t01	AT1G19180.1	19309455
AT3G17860.1	VIT_02s0012g01320.t01	AT1G32640.1	17637675
AT3G17860.1	VIT_02s0012g01320.t01	AT1G32640.1	19309455
AT3G17860.1	VIT_17s0000g02230.t01	AT1G48500.1	19309455
AT3G17860.1	VIT_14s0083g00450.t01	AT1G67170.1	21798944
AT3G17860.1	VIT_09s0002g00890.t01	AT1G72450.1	19309455
AT3G17860.1	VIT_11s0016g00710.t01	AT1G74950.1	19309455
AT3G17860.1	VIT_13s0019g03380.t01	AT2G39940.1	17637675
AT3G17860.1	VIT_13s0019g03380.t01	AT2G39940.1	18547396
AT3G17860.1	VIT_13s0019g03380.t01	AT2G39940.1	19309455
AT3G17860.1	VIT_05s0020g00690.t01	AT3G06430.1	21798944
AT3G17860.1	VIT_17s0000g02230.t01	AT3G17860.1	19151223
AT3G17860.1	VIT_17s0000g02230.t01	AT3G17860.1	19309455
AT3G17860.1	VIT_05s0020g01750.t01	AT4G15700.1	21798944
AT3G17860.1	VIT_00s0309g00050.t01	AT4G17030.1	21798944
AT3G17860.1	VIT_00s0309g00090.t01	AT4G17030.1	21798944
AT3G17860.1	VIT_00s1455g00010.t01	AT4G17030.1	21798944
AT3G17860.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g05560.t01	Wine grape	cytosol	36.36	37.5
AT3G17860.1	Thale cress	nucleus	32.83	36.93
PGSC0003DMT400036790	Potato	cytosol	36.11	36.67
CDY18478	Canola	nucleus	32.32	36.26
Bra021281.1-P	Field mustard	nucleus	32.32	36.26
CDX95810	Canola	nucleus	30.3	35.82
Bra022254.1-P	Field mustard	nucleus	29.8	35.22
CDX92171	Canola	nucleus	29.8	35.12
Solyc03g118540.2.1	Tomato	cytosol	28.54	34.66
KRH39044	Soybean	nucleus	33.59	34.46
AT1G48500.1	Thale cress	nucleus	23.48	30.0
Solyc06g068930.1.1	Tomato	nucleus	17.68	28.46
CDY72405	Canola	plastid	11.11	28.39
PGSC0003DMT400074101	Potato	nucleus	17.93	28.06
GSMUA_Achr7P12530_001	Banana	nucleus	27.53	26.59
GSMUA_Achr9P15630_001	Banana	cytosol	27.02	26.1
GSMUA_Achr5P05900_001	Banana	nucleus	27.27	26.02
TraesCS5A01G204900.1	Wheat	nucleus	23.99	23.23
TraesCS5D01G211200.2	Wheat	nucleus	23.99	22.73
Zm00001d032009_P001	Maize	plastid	7.58	22.39
EER98873	Sorghum	nucleus	22.98	22.3
Zm00001d020409_P002	Maize	nucleus	23.23	22.28
Os08t0428400-01	Rice	nucleus	23.99	22.25
TraesCS5B01G203400.2	Wheat	nucleus	23.23	22.12
HORVU5Hr1G060730.3	Barley	plastid	23.23	21.45
EES15016	Sorghum	cytosol	21.21	19.63
Zm00001d050365_P006	Maize	nucleus	20.96	18.95
TraesCSU01G139100.1	Wheat	nucleus	16.67	18.7
TraesCS4B01G364700.1	Wheat	nucleus	16.16	18.08
HORVU4Hr1G087520.3	Barley	plastid	15.4	17.63
TraesCS5A01G533100.1	Wheat	nucleus	13.38	17.55
TraesCSU01G139000.1	Wheat	nucleus	15.4	16.94
TraesCS5A01G533000.1	Wheat	nucleus	14.9	16.62
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	20.2	14.84

Protein Annotations

EntrezGene:100245759	wikigene:100245759	MapMan:35.1	EMBL:AM452642	ProteinID:CAN80969	ProteinID:CAN80969.1
ProteinID:CCB43288	ProteinID:CCB43288.1	InterPro:CCT_CS	UniProt:F6GSN3	EMBL:FN594950	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
InterPro:IPR010399	EntrezGene:LOC100245759	wikigene:LOC100245759	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320
PANTHER:PTHR33077	PANTHER:PTHR33077:SF14	SMART:SM00979	InterPro:Tify_dom	UniParc:UPI00021091BB	ArrayExpress:VIT_17s0000g02230
EnsemblPlantsGene:VIT_17s0000g02230	EnsemblPlants:VIT_17s0000g02230.t01	RefSeq:XP_002282688	RefSeq:XP_002282688.1	:	:

Description

No Description!

Coordinates

chr17:-:1857317..1861423

Molecular Weight (calculated)

41393.1 Da

IEP (calculated)

9.727

GRAVY (calculated)

-0.295

Length

396 amino acids

Sequence
(BLAST)

001: MERDFLCLGS GKVLPSGKEE SGDSVPARGL GMQWPFPNKV SAIPHFLSFK AVQEDRPRRS VYDRPFASSG LMSVSTADAL ESNQQPHPGV LQKNLNLEKQ
101: VGSQFVMTGY PLQHLDARSV RRAHEVGKFP ASNQPNHSIS VAFSNPVLQS QIAFSGPSVG SSAVKPQPLG GVPVAAPGSY PTICSFIGTT DQKNASKPPG
201: PATQLTIFYA GSVNVFDGIS PEQAQAIMLL AGNVPPVSPN TTLPASQGQG PIIMPSGGDG FMGNQAHTSQ PGSGLPTLIS ASSNVGSQPG GGPNSIDELM
301: AGKTKGALTS TNQPEPPNVV TSLGSTTPTY IPAVPQARKA SLARFLEKRK ERCQTPSQSY SAIPKRFSCR MMSASPYNGS TPASNVVGFS MNSALC

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.