Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92171 | Canola | nucleus | 85.67 | 85.42 |
| AT3G17860.1 | Thale cress | nucleus | 78.51 | 74.72 |
| CDY18478 | Canola | nucleus | 77.31 | 73.37 |
| CDX95570 | Canola | plastid | 29.55 | 66.0 |
| CDY72405 | Canola | plastid | 30.45 | 65.81 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 21.79 | 34.43 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 21.49 | 33.96 |
| CDY11556 | Canola | nucleus | 25.97 | 32.71 |
| PGSC0003DMT400074101 | Potato | nucleus | 23.58 | 31.23 |
| CDY09470 | Canola | nucleus | 25.37 | 31.02 |
| KRH39044 | Soybean | nucleus | 35.52 | 30.83 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 35.82 | 30.3 |
| Solyc06g068930.1.1 | Tomato | nucleus | 22.09 | 30.08 |
| CDY69855 | Canola | nucleus | 24.48 | 29.93 |
| CDX96270 | Canola | cytosol | 23.28 | 29.55 |
| Solyc03g118540.2.1 | Tomato | cytosol | 28.06 | 28.83 |
| PGSC0003DMT400036790 | Potato | cytosol | 31.64 | 27.18 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 27.46 | 22.44 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.16 | 22.2 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.67 | 20.72 |
Protein Annotations
| EnsemblPlants:CDX95810 | EnsemblPlantsGene:GSBRNA2T00101752001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDX95810 | ProteinID:CDX95810.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EF0C3B | MapMan:15.5.45 | : | : |
Description
BnaC05g35610D
Coordinates
chrLK031891:-:403879..407182
Molecular Weight (calculated)
35764.8 Da
IEP (calculated)
9.848
GRAVY (calculated)
-0.493
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSK KGSAASSQFL SFRPSQDDRH RKPGNYHLTH SGSFMPSSVA DGYDSNRNTP YSSVQGARMF
101: PNSHQQQESI TVSMARPGLQ SHYPPGGKSF MSSGINSQPF VGVPIMAPPI SVLPAPGSIV GTTDIRSSSK PLGSPAQLTV FYAGSVCVYD DISPDKAKAI
201: MLLAGNGSSM PQAFTPPQTH QQVVHHARAS VDSSAVPPSF MPTASYLSHE GGSSTYGLGA VKATTGFTST YHNNQTVKPQ TVALPQARKA SLARFLEKRK
301: ERVTSASPYC LDKKSPTDCR TPISECISSS FSSAT
101: PNSHQQQESI TVSMARPGLQ SHYPPGGKSF MSSGINSQPF VGVPIMAPPI SVLPAPGSIV GTTDIRSSSK PLGSPAQLTV FYAGSVCVYD DISPDKAKAI
201: MLLAGNGSSM PQAFTPPQTH QQVVHHARAS VDSSAVPPSF MPTASYLSHE GGSSTYGLGA VKATTGFTST YHNNQTVKPQ TVALPQARKA SLARFLEKRK
301: ERVTSASPYC LDKKSPTDCR TPISECISSS FSSAT
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.