Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004207.1-P | Field mustard | nucleus | 94.54 | 95.64 |
| CDX96108 | Canola | cytosol, mitochondrion, nucleus, plastid | 94.25 | 95.35 |
| CDY12623 | Canola | nucleus | 73.85 | 81.07 |
| AT1G67170.1 | Thale cress | nucleus | 73.56 | 71.31 |
| CDY54119 | Canola | mitochondrion | 63.51 | 60.55 |
| VIT_14s0083g00450.t01 | Wine grape | mitochondrion | 58.62 | 47.11 |
| Os02t0192100-01 | Rice | mitochondrion | 31.9 | 44.4 |
| KRH01477 | Soybean | nucleus | 50.86 | 43.81 |
| GSMUA_Achr1P19060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 49.43 | 39.72 |
| GSMUA_Achr1P15680_001 | Banana | endoplasmic reticulum, plasma membrane | 27.01 | 39.5 |
| Solyc02g065630.2.1 | Tomato | nucleus | 45.98 | 36.2 |
| PGSC0003DMT400068308 | Potato | plastid | 45.98 | 35.4 |
| HORVU6Hr1G034720.1 | Barley | nucleus | 40.52 | 30.99 |
| TraesCS6B01G198100.1 | Wheat | extracellular, mitochondrion, nucleus, plastid | 41.38 | 30.38 |
| TraesCS6A01G169900.1 | Wheat | nucleus | 39.94 | 29.76 |
| TraesCS6D01G159700.1 | Wheat | nucleus | 39.94 | 29.76 |
| CDY33066 | Canola | nucleus | 22.99 | 29.41 |
| CDY24052 | Canola | nucleus | 22.7 | 29.04 |
| CDX97599 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 26.15 | 28.09 |
| CDX98491 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 26.15 | 28.0 |
| EES06432 | Sorghum | mitochondrion | 39.66 | 27.66 |
| CDY00237 | Canola | mitochondrion | 16.09 | 24.89 |
| CDX86949 | Canola | mitochondrion, nucleus, peroxisome, plastid | 15.8 | 24.23 |
| CDY10713 | Canola | mitochondrion | 17.24 | 21.58 |
| CDY51010 | Canola | nucleus | 16.95 | 21.22 |
| CDY08227 | Canola | nucleus | 18.68 | 19.82 |
Protein Annotations
| EnsemblPlants:CDY01786 | EnsemblPlantsGene:GSBRNA2T00112920001 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF5 | ProteinID:CDY01786 |
| ProteinID:CDY01786.1 | SEG:seg | UniParc:UPI0004EBCCF1 | MapMan:35.1 | : | : |
Description
BnaC06g28260D
Coordinates
chrLK031929:+:260367..262253
Molecular Weight (calculated)
38278.2 Da
IEP (calculated)
7.466
GRAVY (calculated)
-0.866
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGQGRHPPP HHLRHPIPIP IPVMPPPPSA QPPFPPFNNM LPPPQLMEQK LVTQHGEMQR LAIENQRLAA THGNLRQELA AAQHELQMLH SQIGSIKSEG
101: EQRMSGLADK VAKMEAELRK SEALKMEMQE ARGEARGLVV AREELMSKVH QLTQEIQKSR GEVQQVPALM SELDGLRQEY QQCRATYDYE KKFYNDHIES
201: LQAMEKNYMS MAMEVQKLQA QLMNGRAGGA YGNNTNAEND ASGHPNGTGY YDDAYGHQGY VPQPAACTAT APNPAVHTAQ YPYPGGSQPG YFPPRPGYYF
301: PRGPPPGSYD PTRLPAGPQG GQFPPGSSNN TPYGSAATTG PRGNPSRR
101: EQRMSGLADK VAKMEAELRK SEALKMEMQE ARGEARGLVV AREELMSKVH QLTQEIQKSR GEVQQVPALM SELDGLRQEY QQCRATYDYE KKFYNDHIES
201: LQAMEKNYMS MAMEVQKLQA QLMNGRAGGA YGNNTNAEND ASGHPNGTGY YDDAYGHQGY VPQPAACTAT APNPAVHTAQ YPYPGGSQPG YFPPRPGYYF
301: PRGPPPGSYD PTRLPAGPQG GQFPPGSSNN TPYGSAATTG PRGNPSRR
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
Arabidopsis Description
FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.