CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70254
CDX79176
CDX80907
CDX83308
CDX84286
CDX86457
CDX90032
CDX91876
CDX95749
CDY07174
CDY15177
CDY31635
CDY40180
CDY41394
CDY43661
CDY45437
CDY48504
CDY58518
CDY67472
CDY67475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	CDX90032	AT1G01440.1	21798944
AT3G51180.1	CDY15177	AT1G01440.1	21798944
AT3G51180.1	CDX83308	AT2G29400.1	21798944
AT3G51180.1	CDX95749	AT2G29400.1	21798944
AT3G51180.1	CDY40180	AT2G29400.1	21798944
AT3G51180.1	CDY45437	AT2G29400.1	21798944
AT3G51180.1	CDX84286	AT2G34710.1	21798944
AT3G51180.1	CDY31635	AT2G34710.1	21798944
AT3G51180.1	CDY43661	AT2G34710.1	21798944
AT3G51180.1	CDX86457	AT3G27960.1	21798944
AT3G51180.1	CDY58518	AT3G27960.1	21798944
AT3G51180.1	CDX79176	AT4G01090.1	21798944
AT3G51180.1	CDX91876	AT4G01090.1	21798944
AT3G51180.1	CDY07174	AT4G01090.1	21798944
AT3G51180.1	CDY48504	AT4G01090.1	21798944
AT3G51180.1	CDY67475	AT4G01090.1	21798944
AT3G51180.1	CDX70254	AT5G04170.1	21798944
AT3G51180.1	CDX80907	AT5G04170.1	21798944
AT3G51180.1	CDY41394	AT5G04170.1	21798944
AT3G51180.1	CDY67472	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73744	Canola	mitochondrion, nucleus	86.86	82.16
AT3G51180.1	Thale cress	nucleus	62.5	56.62
CDY67080	Canola	cytosol, nucleus, plastid	28.6	34.09
CDY45225	Canola	cytosol, nucleus, plastid	29.03	33.5
Solyc02g084080.1.1	Tomato	cytosol	8.05	30.65
CDY39347	Canola	mitochondrion	23.31	26.13
Solyc02g038790.1.1	Tomato	cytosol	11.02	25.87
CDY62587	Canola	mitochondrion, nucleus	22.25	25.74
CDY29391	Canola	extracellular	21.82	25.69
KRH28782	Soybean	cytosol, nucleus, plastid	26.69	25.56
Solyc02g084160.1.1	Tomato	cytosol	8.05	23.9
CDX83740	Canola	nucleus	19.92	23.74
KRH28783	Soybean	nucleus	17.37	23.5
KRH69800	Soybean	plastid	26.91	22.88
EES13033	Sorghum	mitochondrion	21.61	22.67
GSMUA_Achr1P19920_001	Banana	cytosol	21.4	22.65
KRH69802	Soybean	mitochondrion	26.48	21.97
Zm00001d001952_P001	Maize	mitochondrion	20.97	21.9
GSMUA_Achr3P11230_001	Banana	cytosol	20.55	20.95
KRH76672	Soybean	nucleus	16.95	20.57
HORVU2Hr1G109820.1	Barley	mitochondrion	22.03	19.7
TraesCS2B01G520300.1	Wheat	mitochondrion	22.25	19.63
Zm00001d026536_P002	Maize	nucleus	19.28	19.04
TraesCS2D01G492400.1	Wheat	mitochondrion	22.03	18.77
TraesCS2A01G492200.1	Wheat	mitochondrion	22.03	18.74
Os04t0663200-01	Rice	cytosol	15.47	18.58
Solyc02g084200.1.1	Tomato	nucleus	21.61	17.17
Solyc02g084110.1.1	Tomato	cytosol	5.51	17.11
PGSC0003DMT400009146	Potato	nucleus	21.82	17.02
HORVU2Hr1G109740.2	Barley	plastid	22.25	16.99
VIT_04s0023g03180.t01	Wine grape	cytosol	25.42	16.85
PGSC0003DMT400092162	Potato	nucleus	16.95	14.26
PGSC0003DMT400009142	Potato	plasma membrane	16.31	14.26

Protein Annotations

EnsemblPlants:CDX77980	EnsemblPlantsGene:GSBRNA2T00129246001	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	ProteinID:CDX77980	ProteinID:CDX77980.1
SEG:seg	UniParc:UPI0004EF3536	MapMan:15.5.16	:	:	:

Description

BnaA09g31750D

Coordinates

chrLK031814:+:417628..419946

Molecular Weight (calculated)

52823.2 Da

IEP (calculated)

10.454

GRAVY (calculated)

-0.801

Length

472 amino acids

Sequence
(BLAST)

001: MNIMKRSKKS RVSWPSGPKL CQVKIFRTED CPAKVASQPQ HLPPGFEGNH YAEKISVSTI PRIKWKRPAK FIVSGAWLMG DGGESTERRT ENLRISKVLE
101: ALYPHRSTIP SRPSVSPVVG AESFDDSKTP TIRLTPIEDE SESSEESSNT SLESNITASK QSSLETKPQS LAALMKTKEQ GSMIDPDLLI KLLRDPKMIK
201: NLITDTTGKS SAPKNQPLET KTINPTRLVP EHATALPMTK PQPTIIPQKQ GFTASQPVTN PEQRRRRVSP PKPVNQNISP LNQINRNPVS IPMPVQPCVT
301: QPSLPARIPS SSLPMNVNPH QRPPRVFSEP KVTMNPPHHN PAYRTPEMNI VQAPVGFGRG PENGFNNYPM NFNRTGKPVV QPMKSDDYFK NLIREHGTVN
401: HETNQYHSQN GKFNGRFDQN KVQKQCMYYG TARGCQMGDR CVCVHDRLRP NFEAEAPGAK RLKFGSYDRN GF

Best Arabidopsis Sequence Match ( AT3G51180.1 )
(BLAST)

001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F

Arabidopsis Description

Zinc finger CCCH domain-containing protein 45 [Source:UniProtKB/Swiss-Prot;Acc:Q94C33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.