CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71050
CDX80191
CDX88742
CDY08392
CDY09221
CDY31568
CDY38177
CDY70840

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34710.1	CDY08392	AT1G64620.1	21245844
AT2G34710.1	CDY70840	AT1G64620.1	21245844
AT2G34710.1	CDY38177	AT2G18060.1	21245844
AT2G34710.1	CDX71050	AT3G45610.1	21245844
AT2G34710.1	CDX80191	AT3G45610.1	21245844
AT2G34710.1	CDX88742	AT3G45610.1	21245844
AT2G34710.1	CDY09221	AT3G45610.1	21245844
AT2G34710.1	CDY31568	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31635	Canola	nucleus	97.53	97.53
AT2G34710.1	Thale cress	cytosol	93.05	92.72
CDY43661	Canola	cytosol	88.22	92.13
CDY02297	Canola	nucleus	82.21	83.1
CDY09572	Canola	cytosol, nucleus, plastid	82.21	83.1
GSMUA_Achr2P13060_001	Banana	cytosol	7.3	73.81
EER91178	Sorghum	nucleus	73.03	72.6
Zm00001d033246_P004	Maize	cytosol	73.14	72.55
Zm00001d013699_P001	Maize	cytosol	72.91	72.31
Os03t0640800-01	Rice	plastid	73.14	72.29
GSMUA_Achr4P31660_001	Banana	cytosol	72.67	71.83
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	72.56	71.46
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	72.56	71.46
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	72.44	71.35
Os12t0612700-01	Rice	nucleus	71.38	70.88
GSMUA_Achr7P01060_001	Banana	cytosol	71.26	70.43
GSMUA_Achr5P02420_001	Banana	cytosol	72.44	70.37
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	69.73	69.98
GSMUA_Achr8P02960_001	Banana	cytosol	68.2	69.01
GSMUA_Achr2P13050_001	Banana	cytosol	63.37	68.89
EES17386	Sorghum	mitochondrion	68.9	68.26
GSMUA_Achr4P28360_001	Banana	cytosol	71.61	67.56
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	69.85	67.16
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	69.26	66.89
HORVU5Hr1G010650.1	Barley	cytosol	67.37	66.67
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	67.61	66.36
HORVU0Hr1G010250.3	Barley	cytosol	57.48	65.5
CDY31519	Canola	cytosol, nucleus, plastid	64.9	64.82
CDY52706	Canola	cytosol, nucleus, plastid	64.55	64.7
CDX99164	Canola	cytosol, nucleus, plastid	63.72	64.48
CDY47819	Canola	cytosol	63.13	63.96
CDY60592	Canola	cytosol	63.02	63.84
CDY02553	Canola	cytosol	62.54	63.59
CDY69514	Canola	nucleus	47.11	63.49
Zm00001d031061_P007	Maize	mitochondrion	66.2	62.86
CDY51188	Canola	nucleus	53.36	62.83
CDY09191	Canola	cytosol	55.12	62.82
CDY28273	Canola	nucleus	54.42	62.6
CDY45021	Canola	nucleus	54.3	62.47
CDY31031	Canola	extracellular	7.77	61.68
HORVU5Hr1G093150.2	Barley	cytosol, plastid	72.44	61.32
CDY31032	Canola	cytosol	54.3	60.18
CDX68901	Canola	plastid	13.78	57.92
CDY27014	Canola	cytosol, plasma membrane	4.95	56.0
CDY57624	Canola	extracellular	6.01	54.84
Zm00001d018824_P001	Maize	cytosol	8.13	50.37
CDX71242	Canola	peroxisome	4.71	47.62
CDX82038	Canola	extracellular	8.01	41.98
CDY53980	Canola	cytosol, nucleus, peroxisome	7.54	41.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078D4K7	EnsemblPlants:CDX84286	ProteinID:CDX84286
ProteinID:CDX84286.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008289	EnsemblPlantsGene:GSBRNA2T00141380001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EEE8BF	SEG:seg	:

Description

BnaC04g10480D

Coordinates

chrLK031836:+:1446928..1451489

Molecular Weight (calculated)

92942.5 Da

IEP (calculated)

6.402

GRAVY (calculated)

-0.227

Length

849 amino acids

Sequence
(BLAST)

001: MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRHQLI RESPILSNIE PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME
101: ENDRLQKQVS HLVYENGHMK HQLHTASGTT TDNSCESVVV SGQQHQQQNS NHPQHLQRDA NNPAGLLSIA EEALAEFLSK ATGTAVDWVQ MIGMKPGPDS
201: IGIVSISRNC SGIAARACGL VSLEPMKVAE ILKDRQSWLR DCRCVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYSTCLEDG SYVVCERSLT
301: STTGGPNGPP SSSFVRAEMR PSGFLIRPCD GGGSIVHIVD HVDLDAWSVP EVMRPLYESS KILAQKMTVA ALRHARQIAQ ETSGEVQYGG GRQPAVLRTF
401: SQKLCRGFND AVNGFVDDGW SPLGSNDGAE DISVMINLSP GKFGGPSHYG SSFLPSFGSG VLCAKASMLL ENVPPAVLVR FLREHRSEWA DYGVDAYAAA
501: SLRASPFAVP CARAGGFPSN QVILPLAQTV EHEEFLEVVR LEGHAYSPED MGLARDIYLL QLCSGVDENV VGGCAQLVFA PIDESFADDA PLLPSGFRVI
601: PLEHKSTPNG ASGNRTLDLA SALEGSTRQG SEAGPNGCNF RSVVTIAFQF TFDNHTRDSV ASMARQYVRS IVGSIQRVAL AIAPRPGSSI SPMSAPTSPE
701: ALTLVRWISR SYRVHTGADL FGSDSQTSDD TLLRQLWSHT DAILCCSLKT NASPVFTFAN QTGLDMLETT LVALQDIMLD KTLDESGRKA LCSEFPKIMQ
801: QGYAHLPAGV CESSMGRLVS YEQATVWKVL EDDESNHCLA FMFVNWSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.