CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980
CDY24091
CDY25849
CDY45117
CDY46403
CDY48959
CDY60212

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	CDY24091	AT1G53510.1	21798944
AT4G32880.1	CDY25849	AT1G53510.1	21798944
AT4G32880.1	CDY45117	AT1G53510.1	21798944
AT4G32880.1	CDY60212	AT1G53510.1	21798944
AT4G32880.1	CDX73744	AT3G51180.1	21798944
AT4G32880.1	CDX77980	AT3G51180.1	21798944
AT4G32880.1	CDY46403	AT5G41070.1	21798944
AT4G32880.1	CDY48959	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31031	Canola	extracellular	30.2	57.01
CDY27014	Canola	cytosol, plasma membrane	19.8	53.33
CDY57624	Canola	extracellular	24.26	52.69
CDX71242	Canola	peroxisome	18.32	44.05
CDX82038	Canola	extracellular	24.26	30.25
Os01t0200300-01	Rice	cytosol, peroxisome	59.9	28.07
CDY53980	Canola	cytosol, nucleus, peroxisome	19.8	25.81
Bra011392.1-P	Field mustard	cytosol	96.53	23.41
AT4G32880.1	Thale cress	nucleus	91.09	22.09
KRH62081	Soybean	cytosol	75.74	18.13
VIT_04s0008g03250.t01	Wine grape	cytosol	76.24	18.12
KRH52763	Soybean	cytosol	75.74	18.11
CDY02553	Canola	cytosol	72.28	17.48
CDY47819	Canola	cytosol	71.78	17.3
CDY60592	Canola	cytosol	71.78	17.3
Solyc08g066500.2.1	Tomato	cytosol	70.79	17.29
PGSC0003DMT400074934	Potato	cytosol	70.79	17.04
GSMUA_Achr8P20090_001	Banana	cytosol	67.33	16.23
GSMUA_Achr5P06550_001	Banana	cytosol	67.33	16.21
CDY09191	Canola	cytosol	59.41	16.11
EES00115	Sorghum	cytosol, nucleus, plastid	64.85	15.52
CDY52706	Canola	cytosol, nucleus, plastid	61.39	14.64
CDY31519	Canola	cytosol, nucleus, plastid	61.39	14.59
Zm00001d008869_P001	Maize	cytosol	61.39	14.45
CDY43661	Canola	cytosol	56.93	14.15
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	58.42	13.96
CDX99164	Canola	cytosol, nucleus, plastid	57.43	13.83
CDX84286	Canola	cytosol	57.92	13.78
CDY31635	Canola	nucleus	57.92	13.78
CDY09572	Canola	cytosol, nucleus, plastid	56.93	13.69
CDY02297	Canola	nucleus	56.93	13.69
TraesCS3A01G312800.1	Wheat	nucleus	56.93	13.16
CDY45021	Canola	nucleus	47.52	13.01
CDY28273	Canola	nucleus	47.52	13.01
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	55.94	12.9
TraesCS3D01G141500.2	Wheat	nucleus	55.94	12.81
CDY31032	Canola	cytosol	26.73	7.05
CDY51188	Canola	nucleus	24.75	6.93
Zm00001d014252_P002	Maize	cytosol	2.97	3.45
CDY69514	Canola	nucleus	1.49	0.48
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	0.0	0.0
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	0.0	0.0
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	0.0	0.0
PGSC0003DMT400074932	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDX68901	EnsemblPlantsGene:GSBRNA2T00130633001	InterPro:MEKHLA	PFAM:PF08670	ProteinID:CDX68901	ProteinID:CDX68901.1
UniParc:UPI0004EE1FF8	MapMan:35.1	:	:	:	:

Description

BnaC01g05520D

Coordinates

chrLK031789:-:1826732..1827881

Molecular Weight (calculated)

22548.4 Da

IEP (calculated)

6.608

GRAVY (calculated)

0.080

Length

202 amino acids

Sequence
(BLAST)

001: MTIAFQLAFE MHMQENVASM ARQYVRSVIA SVQRVALALS PSSHQLSGGL RPPPASPEAH TLARWISHSY RCYLGVELLK PNGNDLLKSL WHHPDALMCC
101: SLKALPPVFT FANQAGLDML ETTLVALQDI TLEKIFDNNG KKTFCSDFPQ IMQQGFMCTD GGICMSSMGR AVTYEKAVAW KVLNDDEDPH CICFVFLNWS
201: FI

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.