CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018948.1-P	Field mustard	cytosol	99.16	99.16
CDY47819	Canola	cytosol	99.05	99.05
CDY02553	Canola	cytosol	97.14	97.48
AT1G52150.2	Thale cress	cytosol	96.18	96.3
CDY51188	Canola	nucleus	80.07	93.07
VIT_09s0002g03740.t01	Wine grape	cytosol	85.92	85.61
KRH47223	Soybean	nucleus	85.32	85.32
KRH44288	Soybean	nucleus	84.49	84.49
Solyc03g120910.2.1	Tomato	cytosol	83.53	83.73
PGSC0003DMT400006735	Potato	cytosol	83.41	83.71
KRH47225	Soybean	cytosol	83.77	83.47
PGSC0003DMT400068037	Potato	cytosol	81.5	81.6
Solyc12g044410.1.1	Tomato	nucleus	81.26	81.36
KRH44292	Soybean	cytosol	82.46	81.29
KRH58026	Soybean	cytosol	22.79	81.28
CDY69514	Canola	nucleus	57.76	76.83
CDY45021	Canola	nucleus	65.75	74.66
CDY28273	Canola	nucleus	65.63	74.53
GSMUA_Achr8P20090_001	Banana	cytosol	73.51	73.51
GSMUA_Achr5P06550_001	Banana	cytosol	73.51	73.42
CDX68901	Canola	plastid	17.3	71.78
EES00115	Sorghum	cytosol, nucleus, plastid	66.95	66.47
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	12.29	66.45
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	12.29	66.45
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	12.29	66.45
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	65.99	65.44
CDY43661	Canola	cytosol	63.25	65.19
Zm00001d008869_P001	Maize	cytosol	66.23	64.69
CDY31635	Canola	nucleus	64.2	63.37
CDX84286	Canola	cytosol	63.84	63.02
TraesCS3A01G312800.1	Wheat	nucleus	65.63	62.93
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	65.51	62.67
TraesCS3D01G141500.2	Wheat	nucleus	65.87	62.59
CDY52706	Canola	cytosol, nucleus, plastid	62.89	62.22
CDY02297	Canola	nucleus	62.29	62.14
CDY31519	Canola	cytosol, nucleus, plastid	63.01	62.12
CDY09572	Canola	cytosol, nucleus, plastid	62.17	62.02
CDY09191	Canola	cytosol	53.82	60.54
CDY31031	Canola	extracellular	7.64	59.81
CDX99164	Canola	cytosol, nucleus, plastid	59.43	59.36
Os01t0200300-01	Rice	cytosol, peroxisome	29.95	58.24
CDY31032	Canola	cytosol	51.19	56.01
CDY57624	Canola	extracellular	5.97	53.76
CDY27014	Canola	cytosol, plasma membrane	4.77	53.33
CDX71242	Canola	peroxisome	5.01	50.0
CDX82038	Canola	extracellular	8.35	43.21
Zm00001d014252_P002	Maize	cytosol	8.95	43.1
CDY53980	Canola	cytosol, nucleus, peroxisome	7.28	39.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078J7G2	UniProt:A0A078J7G2	EnsemblPlants:CDY60592
ProteinID:CDY60592	ProteinID:CDY60592.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00029833001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EEB26E	SEG:seg	:	:

Description

BnaA06g01940DBnaA06g01940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7G2]

Coordinates

chrLK033896:-:17639..22445

Molecular Weight (calculated)

91876.6 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.117

Length

838 amino acids

Sequence
(BLAST)

001: MAMSCKDGKM GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPTLPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIISISH
201: GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQHFVRAE MLPSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVSQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFSNGFAPVS NVVLCAKASM LLQNVPPGIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EESMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSTKEVSSPN
601: RTLDLASALE IGPAGTTKAS TDQSGSSGTC ARSVMTIAFE FGIESHMQEH VASMARQYVR GIISSVQRVA LALSPSHISS QVGLRTPLGT PEAQTLARWI
701: CQSYRCYMGV ELLKSTSEGN ESVLKNLWHH TDAIICCSMK AMPVFTFANQ AGLDMLETTL VSLQDISLEK IFDDNGRKTL CSEFPQIMQQ GFASLQGGIC
801: LSSMGRPVSY ERAVAWKVLN EEENAHCICF VFINWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.