Factsheet for Bra018948.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60592	Canola	cytosol	99.16	99.16
CDY47819	Canola	cytosol	98.33	98.33
Bra014315.1-P	Field mustard	cytosol	95.7	96.16
AT1G52150.2	Thale cress	cytosol	95.7	95.82
VIT_09s0002g03740.t01	Wine grape	cytosol	85.68	85.37
KRH47223	Soybean	nucleus	84.96	84.96
KRH44288	Soybean	nucleus	84.13	84.13
Solyc03g120910.2.1	Tomato	cytosol	83.29	83.49
PGSC0003DMT400006735	Potato	cytosol	83.17	83.47
KRH47225	Soybean	cytosol	83.41	83.12
PGSC0003DMT400068037	Potato	cytosol	81.26	81.36
Solyc12g044410.1.1	Tomato	nucleus	80.91	81.0
KRH44292	Soybean	cytosol	82.1	80.94
KRH58026	Soybean	cytosol	22.43	80.0
Bra011392.1-P	Field mustard	cytosol	74.58	75.03
Bra034539.1-P	Field mustard	nucleus	74.11	74.64
GSMUA_Achr8P20090_001	Banana	cytosol	73.15	73.15
GSMUA_Achr5P06550_001	Banana	cytosol	73.15	73.06
Bra030088.1-P	Field mustard	mitochondrion	10.5	72.13
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	12.29	66.45
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	12.29	66.45
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	12.29	66.45
EES00115	Sorghum	cytosol, nucleus, plastid	66.47	66.0
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	65.63	65.09
Zm00001d008869_P001	Maize	cytosol	65.75	64.22
Bra021926.1-P	Field mustard	cytosol	63.72	63.35
Bra005398.1-P	Field mustard	cytosol	63.6	62.78
TraesCS3A01G312800.1	Wheat	nucleus	65.27	62.59
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	65.16	62.33
TraesCS3D01G141500.2	Wheat	nucleus	65.51	62.24
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	62.05	61.9
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	62.65	61.76
Bra020236.1-P	Field mustard	nucleus	61.69	61.11
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	59.07	59.42
Os01t0200300-01	Rice	cytosol, peroxisome	30.07	58.47
Zm00001d014252_P002	Maize	cytosol	8.95	43.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra018948	EnsemblPlants:Bra018948.1	EnsemblPlants:Bra018948.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4DR05	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000253E90F	SEG:seg	:	:	:	:

Description

AT1G52150 (E=0.0) ATHB-15, ATHB15, CNA, ICU4 | ATHB-15; DNA binding / transcription factor

Coordinates

chrA06:+:1054705..1058720

Molecular Weight (calculated)

91863.6 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.111

Length

838 amino acids

Sequence
(BLAST)

001: MAMSCKDGKM GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPTLPGKD TSCESVVTSG QHQLASQIPP RDASPAGLLS IAEETLAEFL SEAAGTAVEW VQMPGMKPGP DSIGIISISH
201: GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM NVCPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQHFVRAE MLPSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVSQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFSNGFAPVS NVVLCAKASM LLQNVPPGIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EESMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSTKEVSSPN
601: RTLDLASALE IGPAGTTKAS TDQSGNSGTC ARSVMTIAFE FGIESHMQEH VASMARQYVR GIISSVQRVA LALSPSHISS QVGLRTPLGT PEAQTLARWI
701: CQSYRCYMGV ELLKSTSEGN ESILKNLWHH TDAIICCSMK AMPVFTFANQ AGLDMLETTL VSLQDISLEK IFDDNGRKTL CSEFPQIMQQ GFASLQGGIC
801: LSSMGRPVSY ERAVAWKVLN EEENAHCICF VFINWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.