CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13033

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	EES13033	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008869_P001	Maize	cytosol	89.1	87.65
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	83.41	83.31
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	15.17	82.58
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	15.17	82.58
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	15.17	82.58
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	83.77	80.71
TraesCS3A01G312800.1	Wheat	nucleus	83.06	80.21
TraesCS3D01G141500.2	Wheat	nucleus	83.18	79.59
Os01t0200300-01	Rice	cytosol, peroxisome	39.45	77.26
PGSC0003DMT400074932	Potato	nucleus	43.84	70.08
GSMUA_Achr5P06550_001	Banana	cytosol	69.19	69.61
VIT_09s0002g03740.t01	Wine grape	cytosol	69.19	69.44
Solyc08g066500.2.1	Tomato	cytosol	67.89	69.29
GSMUA_Achr8P20090_001	Banana	cytosol	68.48	68.97
VIT_04s0008g03250.t01	Wine grape	cytosol	69.08	68.59
PGSC0003DMT400006735	Potato	cytosol	67.54	68.26
Solyc03g120910.2.1	Tomato	cytosol	67.42	68.06
PGSC0003DMT400074934	Potato	cytosol	67.65	68.06
CDY02553	Canola	cytosol	66.35	67.07
AT1G52150.2	Thale cress	cytosol	66.47	67.03
CDY60592	Canola	cytosol	66.47	66.95
CDY47819	Canola	cytosol	66.35	66.83
Bra014315.1-P	Field mustard	cytosol	65.88	66.67
Solyc12g044410.1.1	Tomato	nucleus	66.0	66.55
PGSC0003DMT400068037	Potato	cytosol	66.0	66.55
CDY69514	Canola	nucleus	49.64	66.51
Bra018948.1-P	Field mustard	cytosol	66.0	66.47
AT4G32880.1	Thale cress	nucleus	65.05	65.91
Bra011392.1-P	Field mustard	cytosol	64.81	65.67
Bra034539.1-P	Field mustard	nucleus	64.69	65.62
CDY51188	Canola	nucleus	56.04	65.6
CDY45021	Canola	nucleus	56.99	65.18
CDY28273	Canola	nucleus	56.75	64.91
CDX68901	Canola	plastid	15.52	64.85
EER91178	Sorghum	nucleus	61.97	61.24
OQU93425	Sorghum	nucleus	58.41	58.55
EER94065	Sorghum	nucleus	57.94	58.35
EES17386	Sorghum	mitochondrion	58.89	57.99
Bra030088.1-P	Field mustard	mitochondrion	8.29	57.38
KRH33388	Soybean	cytosol	4.74	38.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EntrezGene:8080519	UniProt:C5XLT3	ncoils:Coil
EnsemblPlants:EES00115	ProteinID:EES00115	ProteinID:EES00115.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA
PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3003G028300	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	unigene:Sbi.12458	UniParc:UPI0001A843C7	RefSeq:XP_002454995.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:2499007..2504480

Molecular Weight (calculated)

91853.4 Da

IEP (calculated)

6.137

GRAVY (calculated)

-0.028

Length

844 amino acids

Sequence
(BLAST)

001: MVTAKEAAAA AMDASKYVRY TPEQVEALER LYYECPKPSS LRRQQLVRDC PVLASVDPKQ IKVWFQNRRC REKQRKESSR LQALNRKLTA MNKLLMEEND
101: RLQKQVSQLV YENGYYRQQT QQSAGLATTD TSCESVVTSG HQNVAAAAPQ AQPRDAGPAG LMSIAEETLT EFLSKATGTA VEWVQMPGMK PGPDSIGIIA
201: ISHGCAGVAA RACGLVGMEP AKVAEVLKDR LLWLRDCRSM EVVNVLPAGN NGTIELLYLQ LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSTKQGG
301: PSMPLVQPFI RGEMLPSGFL IRPSDGGGSV IHIVDHIDLE PWSVPEVVRP LYESSAMVAQ KMSMAALRYL RQVAHEDTHS VITGWGRQPA ALRALSQKLT
401: RGFNEALNGL ADDGWSVVES DGVDDVCISV NSSPSKVINC NATFNNGLPV VSSSVLCAKA SMLLQDVSPP ALLRFMREQR SQWADSNLDA FFASAMKPNF
501: CNLPMSRLGG FSGQVILPLA HTFDPEEFLE VIKLGNASNY QDALLHRDLF LLQMYNGVDE NMVGTCSELI FAPIDASFSD DSPLLPSGFR IIPIDAPLDT
601: SSPKCTLDLA STLEVGTPRS RINGSGPGNA ASAGSKAVMT IVFQFAFESH LQDSVAAMAR QYMRSIIASV QRIALALSSS RLVPHGSSIS HTPASPEATT
701: LARWICQSYR FHFGAELIKS GDGSGCEGVL KTLWHHASAI LCCSLKALPV FTFANQSGLD MLETTLVALQ DITLEKVFDD QGRKNLCAEL PGIMEQGFTC
801: IPSGLCVSGL GRPVSYEKAL AWKVLDDDSG AHCICFMFVN WSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.