Factsheet for VIT_04s0008g03250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03180.t01
VIT_14s0068g01520.t01
VIT_19s0014g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT4G32880.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944
AT4G32880.1	VIT_14s0068g01520.t01	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074932	Potato	nucleus	55.18	88.83
KRH62081	Soybean	cytosol	85.41	86.02
VIT_09s0002g03740.t01	Wine grape	cytosol	84.71	85.61
KRH52763	Soybean	cytosol	84.94	85.44
Solyc08g066500.2.1	Tomato	cytosol	82.59	84.89
PGSC0003DMT400074934	Potato	cytosol	83.53	84.62
CDY45021	Canola	nucleus	70.12	80.76
CDY28273	Canola	nucleus	69.88	80.49
CDY69514	Canola	nucleus	59.65	80.48
Bra011392.1-P	Field mustard	cytosol	78.82	80.43
Bra034539.1-P	Field mustard	nucleus	78.71	80.41
AT4G32880.1	Thale cress	nucleus	78.71	80.31
GSMUA_Achr8P20090_001	Banana	cytosol	76.82	77.92
GSMUA_Achr5P06550_001	Banana	cytosol	75.53	76.52
CDX68901	Canola	plastid	18.12	76.24
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	68.82	69.23
EES00115	Sorghum	cytosol, nucleus, plastid	68.59	69.08
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	66.71	67.1
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	12.24	67.1
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	12.24	67.1
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	12.24	67.1
Zm00001d008869_P001	Maize	cytosol	67.18	66.55
VIT_06s0004g02800.t01	Wine grape	nucleus	65.76	66.23
TraesCS3A01G312800.1	Wheat	nucleus	66.12	64.3
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	66.12	64.16
TraesCS3D01G141500.2	Wheat	nucleus	66.35	63.95
VIT_18s0001g00620.t01	Wine grape	cytosol	7.65	63.11
Os01t0200300-01	Rice	cytosol, peroxisome	30.94	61.02
VIT_13s0019g04320.t01	Wine grape	nucleus	58.59	59.22
Zm00001d014252_P002	Maize	cytosol	8.94	43.68

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243970	wikigene:100243970	MapMan:15.5.3.2	Gene3D:3.30.530.20	EMBL:AM453607
ProteinID:CAN61201	ProteinID:CAN61201.1	ProteinID:CCB46692	ProteinID:CCB46692.1	ncoils:Coil	UniProt:F6H3C8
EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EntrezGene:LOC100243970	wikigene:LOC100243970	InterPro:MEKHLA
PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF344	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	TIGR:TC54190	UniParc:UPI000210A959	ArrayExpress:VIT_04s0008g03250	EnsemblPlantsGene:VIT_04s0008g03250	EnsemblPlants:VIT_04s0008g03250.t01
RefSeq:XP_002283717	RefSeq:XP_002283717.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:2700630..2709554

Molecular Weight (calculated)

93779.5 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.152

Length

850 amino acids

Sequence
(BLAST)

001: MAVSSSCKDA KMALDNGKYV RYTPEQVEAL ERLYHDCPKP SSLRRQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE
101: NDRLQKQVSQ LVYENSFFRQ QTQNATLATT DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE WVQMPGMKPG PDSIGIVAIS
201: HGCTGVAARA CGLVSLEPTR VAEILKDWPS WYRECRNVDV LNVLSTGNGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVVCER SLNNTQNGPS
301: MPPVQYFVRA EKLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLAQKT TMAALRQLRQ ISQEVSQPTN TGWGRRPAAL RALGQRLTKG
401: FNEAVNGFTD EGWSMMESDG IDDVTLLVNS SPAKMMGVNL SYASGFPSMS NAVLCAKASM LLQNVPPAIL LRFLREHRSE WADSSIDAYS AAAVKAGPCT
501: LPVSRAGGYG GQVILPLAHT IEHEEANLIR FNCLQQFMEV IKLENVDHYR EDLMMSGDVF LLQLCSGVDD NAVGTCSELI FAPIDASFSD DAPLLPSGFR
601: IIPLDSGVDG SSPNRTLDLA SSLEVGPAGN KASSDNSGHT GSAKSVMTIS FQFAFEMHLQ ENVASMARQY VRSIISSVQR VALALSPSRF GPQMGFRPLP
701: GTPEAHTLAR WICQSYRCYL GVELLKPSNE GNESILKTLW HHSDAVMCCS LKALPVFTFA NQAGLDMLET TLVALQDITL EKTFDDNGRK TLCSEFPQIM
801: QQGFVCLQGG VCLSSMGRPV SYERAVAWKV LTEEDNAHCI CFMFINWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.