Factsheet for Zm00001d008869_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001952_P001
Zm00001d006103_P001
Zm00001d026536_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	Zm00001d001952_P001	AT3G51180.1	21798944
AT4G32880.1	Zm00001d026536_P002	AT3G51180.1	21798944
AT4G32880.1	Zm00001d006103_P001	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00115	Sorghum	cytosol, nucleus, plastid	87.65	89.1
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	78.79	80.0
TraesCS3A01G312800.1	Wheat	nucleus	79.14	77.69
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	79.02	77.4
TraesCS3D01G141500.2	Wheat	nucleus	78.67	76.53
PGSC0003DMT400074932	Potato	nucleus	43.12	70.08
Solyc08g066500.2.1	Tomato	cytosol	65.97	68.44
VIT_09s0002g03740.t01	Wine grape	cytosol	67.02	68.37
GSMUA_Achr5P06550_001	Banana	cytosol	65.97	67.46
PGSC0003DMT400006735	Potato	cytosol	65.5	67.31
GSMUA_Achr8P20090_001	Banana	cytosol	65.62	67.18
VIT_04s0008g03250.t01	Wine grape	cytosol	66.55	67.18
Solyc03g120910.2.1	Tomato	cytosol	65.38	67.11
PGSC0003DMT400074934	Potato	cytosol	65.5	66.98
AT1G52150.2	Thale cress	cytosol	65.15	66.79
CDY60592	Canola	cytosol	64.69	66.23
CDY02553	Canola	cytosol	64.45	66.23
CDY69514	Canola	nucleus	48.6	66.19
CDY47819	Canola	cytosol	64.57	66.11
Bra014315.1-P	Field mustard	cytosol	64.22	66.07
Bra018948.1-P	Field mustard	cytosol	64.22	65.75
Solyc12g044410.1.1	Tomato	nucleus	63.99	65.59
PGSC0003DMT400068037	Potato	cytosol	63.99	65.59
AT4G32880.1	Thale cress	nucleus	63.05	64.95
Bra011392.1-P	Field mustard	cytosol	63.05	64.95
CDY51188	Canola	nucleus	54.55	64.91
Bra034539.1-P	Field mustard	nucleus	62.7	64.66
CDY45021	Canola	nucleus	55.59	64.63
CDY28273	Canola	nucleus	55.48	64.5
CDX68901	Canola	plastid	14.45	61.39
Zm00001d013699_P001	Maize	cytosol	60.37	60.51
Zm00001d033246_P004	Maize	cytosol	60.26	60.4
Zm00001d048527_P028	Maize	nucleus	57.69	58.51
Zm00001d027317_P015	Maize	nucleus	57.81	58.15
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	55.48	55.03
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	55.36	54.47
Bra030088.1-P	Field mustard	mitochondrion	7.69	54.1
Zm00001d031061_P007	Maize	mitochondrion	55.01	52.8
Zm00001d026325_P001	Maize	mitochondrion	5.01	50.59
Zm00001d018824_P001	Maize	cytosol	7.34	45.99
Zm00001d049529_P001	Maize	cytosol, plastid	9.91	44.74
Zm00001d014252_P002	Maize	cytosol	8.16	40.23
Zm00001d024060_P001	Maize	mitochondrion	8.28	30.47

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103634943	MapMan:15.5.3.2	Gene3D:3.30.530.20	ProteinID:AQK90934.1	ncoils:Coil
ProteinID:DAA05770.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852
PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217	UniProt:Q147T1
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0000EF4868	EnsemblPlantsGene:Zm00001d008869	EnsemblPlants:Zm00001d008869_P001	EnsemblPlants:Zm00001d008869_T001	SEG:seg	:

Description

Homeobox-transcription factor 52Class III HD-Zip III protein HB8%3B Putative homeobox/bZIP/lipid-binding protein family

Coordinates

chr8:-:23362875..23368001

Molecular Weight (calculated)

92033.5 Da

IEP (calculated)

5.929

GRAVY (calculated)

0.019

Length

858 amino acids

Sequence
(BLAST)

001: MVTAKEAAAA AAAMDASKYV RYTPEQVEAL ERLYYECPKP SSLRRQQLVR DCPVLASVDP KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE
101: NDRLQKQVSQ LVYENGYYRQ QTQSAGLATT DTSCESVVTS GPQNVAAVLP QAQPRDAGPA GLMSIAEETL TEFLSKATGT AVEWVQMPGM KPGPDSIGII
201: AISHGCPGVA ARACGLVGME PAKVAEVLKD RPLWLRDCRS MEVVNVLPAG TSGTVELLYM QLYAPTTLAP ARDFWLLRYT SILDDGSLVV CERSLGANQG
301: GPSMPLVQPF VRGEMLPSGF LVRPSDGGGS VIHIVDHMDL EPWSVPEVVR PLYESSAMVA QKMSMAALRY LRQVAHEDTA HSVVTGGWGR QPASLRALSQ
401: KLTRGFNEAL NGLADDGWSV VGSDGVDDVC VSVSSSPSRV VSCNATFSNG PVVGTGSSSV LCAKASMLLQ DVSPPELLRF MREQRSQWAD SNLDAFFASA
501: MKPDFCSLPI PPRLGGFGGQ VILPLAHTFD PEEFLEVIKV GNAGNYQDAL LHRDLFLLQM YNGVDENMAG TCSELIFAPI DASFSDDSPL LPSGFRIIPI
601: DAPLDTSSPK CTLDLASTLE AGTPRSRTSG SGGPGTAAAA CAGSKAVMTI VFQFAFESHL QDSVAAMARQ YVRSIVASVQ RIALALSSAR LVVPHGSGVS
701: HGAPAAGPEA ATLARWICQS YRFHFGAELI KSADGSGCGE AVLKTLWHHA GAILCCSLKA LPVFTFANQS GLDMLETTLV ALQDIALERV FDDQGRKNLC
801: AELPGVMEQG FACVPGGMCV SGLGRPVSYE KALAWKVLDD GSGGVHCVCF MFVNWSFV

Best Arabidopsis Sequence Match ( AT4G32880.1 )
(BLAST)

001: MGGGSNNSHN MDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPCWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHFDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVTG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSILESDGID DVTLLVNSSP TKMMMTSSLP FANGYTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDVGSRTAGD SCGSRGNSKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGL RPPPASPEAH TLARWISHSY
701: RCYLGVDLLK PHGTDLLKSL WHHPDAVMCC SLKALSPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN GKKTLSSEFP QIMQQGFMCM DGGICMSSMG
801: RAVTYEKAVG WKVLNDDEDP HCICFMFLNW SFI

Arabidopsis Description

ATHB-8Homeobox-leucine zipper protein ATHB-8 [Source:UniProtKB/Swiss-Prot;Acc:Q39123]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.