Factsheet for GSMUA_Achr5P06550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT4G32880.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20090_001	Banana	cytosol	83.79	83.89
PGSC0003DMT400074932	Potato	nucleus	49.82	79.17
VIT_09s0002g03740.t01	Wine grape	cytosol	78.19	78.0
Solyc08g066500.2.1	Tomato	cytosol	75.21	76.3
PGSC0003DMT400074934	Potato	cytosol	75.69	75.69
VIT_04s0008g03250.t01	Wine grape	cytosol	76.52	75.53
Solyc03g120910.2.1	Tomato	cytosol	74.02	74.28
PGSC0003DMT400006735	Potato	cytosol	73.78	74.13
AT1G52150.2	Thale cress	cytosol	73.66	73.84
CDY02553	Canola	cytosol	73.42	73.77
CDY69514	Canola	nucleus	55.3	73.65
CDY47819	Canola	cytosol	73.54	73.63
CDY60592	Canola	cytosol	73.42	73.51
Bra014315.1-P	Field mustard	cytosol	73.06	73.5
PGSC0003DMT400068037	Potato	cytosol	73.3	73.48
CDY51188	Canola	nucleus	63.05	73.37
Bra018948.1-P	Field mustard	cytosol	73.06	73.15
Solyc12g044410.1.1	Tomato	nucleus	72.94	73.12
CDY45021	Canola	nucleus	64.0	72.76
CDY28273	Canola	nucleus	63.89	72.63
Bra011392.1-P	Field mustard	cytosol	71.63	72.15
Bra034539.1-P	Field mustard	nucleus	71.51	72.12
AT4G32880.1	Thale cress	nucleus	71.04	71.55
EES00115	Sorghum	cytosol, nucleus, plastid	69.61	69.19
GSMUA_Achr2P13060_001	Banana	cytosol	6.79	67.86
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	12.51	67.74
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	12.51	67.74
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	12.51	67.74
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	68.06	67.57
CDX68901	Canola	plastid	16.21	67.33
Zm00001d008869_P001	Maize	cytosol	67.46	65.97
TraesCS3A01G312800.1	Wheat	nucleus	67.58	64.87
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	67.22	64.38
GSMUA_Achr4P31660_001	Banana	cytosol	65.79	64.26
TraesCS3D01G141500.2	Wheat	nucleus	67.46	64.17
GSMUA_Achr7P01060_001	Banana	cytosol	65.55	64.03
GSMUA_Achr5P02420_001	Banana	cytosol	65.91	63.27
GSMUA_Achr2P13050_001	Banana	cytosol	58.4	62.74
GSMUA_Achr8P02960_001	Banana	cytosol	62.46	62.46
GSMUA_Achr4P28360_001	Banana	cytosol	66.63	62.11
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	61.62	61.99
Bra030088.1-P	Field mustard	mitochondrion	8.94	61.48
Os01t0200300-01	Rice	cytosol, peroxisome	28.96	56.38
KRH33388	Soybean	cytosol	5.6	45.19
Zm00001d014252_P002	Maize	cytosol	8.94	43.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr5G06550_001	EnsemblPlants:GSMUA_Achr5P06550_001	EnsemblPlants:GSMUA_Achr5T06550_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0SW84	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF344
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000295B2C1	SEG:seg	:	:	:	:

Description

Homeobox-leucine zipper protein ATHB-15 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06550_001]

Coordinates

chr5:-:4807095..4816094

Molecular Weight (calculated)

92725.8 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.103

Length

839 amino acids

Sequence
(BLAST)

001: MIALTSCEEG KMGIVDPGKY VRYTPEQVEA LERLYHECPK PSSMRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE AARLQAVNRK LTAMNKLLME
101: ENDRLQKQVS QMVYENGYFR QQTQNAALTT TNASCESVVT NGQQHLTPQH PPRDASPAGL MSIAEETLTE FLSKATGTAI EWVQMPGMKP GPDSIGIVAI
201: SHGCTGVAAR ACGLVGLEPT KVAEILKDRL SWFRDCRSVE IINVLPTGSN GTIELLYMQV YAPTTLAPAR DFWLLRYTSI LEDRSLVVCE RSLNSTLGGP
301: SMPTVQPFVR AEMLPSGYLI RPCEGGGSVI HIVDHLDLEP WSVPEVLRPL YESSTVLSQK TTMVALRHLR QIAHETTHSS VSGWGKRPAA LRALSQRLSR
401: GFNEAVNGFV DDGWSMVSSD GMEDITVLVN SSCSKLMGLN LSFVNGCPST TSSVLCAKAT MLLQNISPPM LLRFLREHRS EWADSNIDGY SAASVKAIPH
501: TLPISRTGCS GGQVILPLAH TLEHEEFLEV IKFESIGNNR EMPMPRDLYL LQLCNGVDEN AVGTCSELIF APIDASFADD APLLPSGFRI IPLDFKMDTN
601: SPNRTLDLAS ALEVGPTGSR VHNDYSGNRG NIRSVMTIAF QFAFESHLQE DVASMARQYI RNIIASVQRL SLTLSPSHLG SHGGLRIPPG SPEAATLACW
701: ICHSYRSYSG AEFLKPSADN SDSLLKMLWH HSDAIICCSL KAMPVFTFAN QAGLDMLETT LIALQDITLE KIFVDEGRKM ICAELPHVIQ QGSICLQAGL
801: CISSMGRPVS YERAVAWKVL DNEDNAHCIC FMFVNWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.