Factsheet for GSMUA_Achr8P02960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P17670_001
GSMUA_Achr3P19420_001
GSMUA_Achr5P12010_001
GSMUA_Achr8P12100_001
GSMUA_Achr9P01870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	GSMUA_Achr3P19420_001	AT1G12980.1	17376809
AT1G30490.1	GSMUA_Achr9P01870_001	AT1G12980.1	17376809
AT1G30490.1	GSMUA_AchrUn_...	AT1G12980.1	17376809
AT1G30490.1	GSMUA_Achr3P19420_001	AT1G12980.1	18830673
AT1G30490.1	GSMUA_Achr9P01870_001	AT1G12980.1	18830673
AT1G30490.1	GSMUA_AchrUn_...	AT1G12980.1	18830673
AT1G30490.1	GSMUA_Achr1P17670_001	AT3G45610.1	21245844
AT1G30490.1	GSMUA_Achr5P12010_001	AT3G45610.1	21245844
AT2G34710.1	GSMUA_Achr11P...	AT2G18060.1	21245844
AT2G34710.1	GSMUA_Achr8P12100_001	AT2G18060.1	21245844
AT2G34710.1	GSMUA_Achr1P17670_001	AT3G45610.1	21245844
AT2G34710.1	GSMUA_Achr5P12010_001	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13060_001	Banana	cytosol	8.1	80.95
GSMUA_Achr4P31660_001	Banana	cytosol	80.21	78.35
GSMUA_Achr2P13050_001	Banana	cytosol	71.63	76.95
Os03t0640800-01	Rice	plastid	78.19	76.37
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	76.64	76.09
EER91178	Sorghum	nucleus	77.35	76.0
GSMUA_Achr7P01060_001	Banana	cytosol	77.71	75.9
Zm00001d033246_P004	Maize	cytosol	77.23	75.7
Zm00001d013699_P001	Maize	cytosol	77.23	75.7
GSMUA_Achr5P02420_001	Banana	cytosol	78.55	75.4
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	76.64	74.59
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	76.64	74.59
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	76.52	74.48
KRH11775	Soybean	cytosol, nucleus, plastid	75.09	74.47
GSMUA_Achr4P28360_001	Banana	cytosol	79.26	73.89
KRH36781	Soybean	cytosol, nucleus, plastid	74.37	73.24
Os12t0612700-01	Rice	nucleus	74.61	73.22
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	73.42	72.3
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	72.94	71.92
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	72.47	71.87
KRH43001	Soybean	cytosol	72.35	71.5
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	70.32	70.66
KRH59117	Soybean	cytosol	71.75	70.57
Solyc02g069830.2.1	Tomato	nucleus	70.44	70.19
EES17386	Sorghum	mitochondrion	71.04	69.54
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	72.23	68.94
HORVU5Hr1G010650.1	Barley	cytosol	70.44	68.88
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	72.47	68.86
AT2G34710.1	Thale cress	cytosol	69.85	68.78
CDY31635	Canola	nucleus	69.37	68.55
CDY43661	Canola	cytosol	66.15	68.27
Bra005398.1-P	Field mustard	cytosol	69.01	68.2
CDX84286	Canola	cytosol	69.01	68.2
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	69.85	67.75
AT1G30490.1	Thale cress	nucleus	67.7	67.54
HORVU0Hr1G010250.3	Barley	cytosol	59.95	67.52
Bra021926.1-P	Field mustard	cytosol	67.46	67.14
CDY09572	Canola	cytosol, nucleus, plastid	67.1	67.02
CDY02297	Canola	nucleus	67.1	67.02
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	67.1	67.02
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	65.67	66.07
Zm00001d031061_P007	Maize	mitochondrion	69.96	65.66
HORVU5Hr1G093150.2	Barley	cytosol, plastid	76.64	64.11
GSMUA_Achr8P20090_001	Banana	cytosol	63.89	63.96
GSMUA_Achr5P06550_001	Banana	cytosol	62.46	62.46
Zm00001d018824_P001	Maize	cytosol	9.3	56.93
CDX71242	Canola	peroxisome	4.77	47.62
Solyc01g057960.1.1	Tomato	plastid	7.15	43.48
AT5G32670.1	Thale cress	cytosol, plastid	9.3	40.62
CDY53980	Canola	cytosol, nucleus, peroxisome	6.91	37.42

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr8G02960_001	EnsemblPlants:GSMUA_Achr8P02960_001	EnsemblPlants:GSMUA_Achr8T02960_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0TM48	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000294AE6F	SEG:seg	:	:	:	:

Description

Homeobox-leucine zipper protein HOX32 [Source:GMGC_GENE;Acc:GSMUA_Achr8G02960_001]

Coordinates

chr8:-:2047234..2053944

Molecular Weight (calculated)

92468.6 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.127

Length

839 amino acids

Sequence
(BLAST)

001: MDAGKYVRYT PEQVEALERV YNECPKPSSL KRQQLIRECP ILSNIDPKQI KVWFQNRRCR EKQKKEACRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVC
101: ENGYMRQQLH NASVATTDTS CESVVTSGQH HHQQNPTPQC PQKDPNNPAG LLAIAEETLA EFLSKATGTA VEWVQMVGMK PGPDSIGIIA VSRNCSGVAA
201: RACGLVNLEP TKVAEILKDR LSWYHDCRCL DVLTVIPTGN GGNIELLYMQ TYAPTTLASA RDFWILRYTT CLEDGSLVIC ERSLTPSTGG PVGPAASDFV
301: RATMLPSGYL IRPCEGGGSM MHIVDHVDLD VWSVPEVIRP LYESPEILAQ KMTLAALRHI RQISQEASGE IAYVGRHQPA VLRNFIRRLS RGFNDAVNGF
401: ADDGWSLMGS DGVEDVTIAI NSSPNKFHRS HFNSSTAFSG IGCGILCAKA SMLLQNVPPA LLVCFLREHR SEWADFGVDA YSASSLRASP YAVPGVRSGS
501: NFVGNQIILP LAHTTEHEET LEVVRIVDHG FNQDDVLSRN IHLLQLCRGV DENAAGACAQ LVFAPIDESF ADDTPLLTSG FRIIPLDSRP DGPKATRTLD
601: LASTLEVGSG AAAHTANKTT CSAFNSRSVM TVAFQFTYEN HLRENVAAMA RQYVRSVVTS VQRVAMAIAP SRLGSHIGAK QPLGSPEAHT LAQWIFRSYR
701: FHIGVDLFQA DSHTSESLLK NLWHHSDAIV CYALKASRLF CVPSIFNFAN QAGLDMLETT HVALQDITLE KILDDSSRKV LNAEFPKIMQ QGFAYLPAGI
801: CSSSMGRPIS YEQVVAWKVL NDVDSPHCLA FMFVNWSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.