Factsheet for PGSC0003DMT400030829

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008830
PGSC0003DMT400009136
PGSC0003DMT400011492
PGSC0003DMT400047887
PGSC0003DMT400058729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	PGSC0003DMT400008830	AT1G24590.1	17376809
AT1G30490.1	PGSC0003DMT400011492	AT1G24590.1	17376809
AT1G30490.1	PGSC0003DMT400047887	AT1G24590.1	17376809
AT1G30490.1	PGSC0003DMT400058729	AT3G45610.1	21245844
AT2G34710.1	PGSC0003DMT400009136	AT2G18060.1	21245844
AT2G34710.1	PGSC0003DMT400058729	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	94.01	94.12
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	85.21	86.95
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	84.74	85.44
KRH36781	Soybean	cytosol, nucleus, plastid	84.04	84.04
KRH11775	Soybean	cytosol, nucleus, plastid	82.98	83.57
KRH43001	Soybean	cytosol	79.81	80.09
KRH59117	Soybean	cytosol	80.05	79.95
GSMUA_Achr2P13060_001	Banana	cytosol	7.75	78.57
AT2G34710.1	Thale cress	cytosol	76.88	76.88
Bra021926.1-P	Field mustard	cytosol	76.06	76.87
GSMUA_Achr4P31660_001	Banana	cytosol	77.35	76.72
EER91178	Sorghum	nucleus	76.88	76.7
AT1G30490.1	Thale cress	nucleus	75.7	76.69
Os03t0640800-01	Rice	plastid	77.23	76.6
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	77.46	76.57
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	77.46	76.57
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	75.47	76.55
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	77.35	76.45
Bra005398.1-P	Field mustard	cytosol	76.17	76.44
Zm00001d033246_P004	Maize	cytosol	76.64	76.28
Zm00001d013699_P001	Maize	cytosol	76.64	76.28
GSMUA_Achr5P02420_001	Banana	cytosol	78.17	76.2
GSMUA_Achr7P01060_001	Banana	cytosol	75.7	75.09
GSMUA_Achr2P13050_001	Banana	cytosol	68.54	74.78
GSMUA_Achr4P28360_001	Banana	cytosol	78.29	74.11
Os12t0612700-01	Rice	nucleus	73.83	73.57
GSMUA_Achr8P02960_001	Banana	cytosol	72.3	73.42
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	72.89	73.4
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	73.12	70.55
HORVU5Hr1G010650.1	Barley	cytosol	70.77	70.28
EES17386	Sorghum	mitochondrion	70.66	70.25
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	71.95	69.74
PGSC0003DMT400074932	Potato	nucleus	43.19	69.7
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	70.31	69.25
HORVU0Hr1G010250.3	Barley	cytosol	60.33	68.99
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	67.84	68.73
PGSC0003DMT400074934	Potato	cytosol	65.96	66.98
PGSC0003DMT400006735	Potato	cytosol	65.61	66.95
HORVU5Hr1G093150.2	Barley	cytosol, plastid	76.88	65.3
PGSC0003DMT400068037	Potato	cytosol	63.85	64.99
Zm00001d031061_P007	Maize	mitochondrion	67.84	64.65
Zm00001d018824_P001	Maize	cytosol	8.22	51.09
CDX71242	Canola	peroxisome	4.46	45.24
AT5G32670.1	Thale cress	cytosol, plastid	9.86	43.75
CDY53980	Canola	cytosol, nucleus, peroxisome	7.63	41.94

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102579068	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	UniProt:M1AUU8	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
EnsemblPlantsGene:PGSC0003DMG400011810	PGSC:PGSC0003DMG400011810	EnsemblPlants:PGSC0003DMT400030829	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000294F2FA	RefSeq:XP_006363649.1	SEG:seg	:	:

Description

PHAVOLUTA-like HD-ZIPIII protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011810]

Coordinates

chr2:+:13954351..13961179

Molecular Weight (calculated)

93168.4 Da

IEP (calculated)

5.862

GRAVY (calculated)

-0.139

Length

852 amino acids

Sequence
(BLAST)

001: MALCLQRGGG GESGSKNDMD NGKYVRYTPE QVEALERVYA ECPKPTSLRR QQLIRECPIL SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK
101: LLMEENDRLQ KQVSQLVYEN GYMKQQINTV SSTTTDTSCE SVVVSGQQQR KNPTPQHPER DANNPAGLLA IAEETLAEFL GKATGTAVDW VQMIGMKPGP
201: DSIGIVAVSR NCSGVAARAC GLVSLEPTKV AEILKDRPSW YRDCRCLNVL SVIPTGNGGT IELIYLQTYA PTTLATARDF WTLRYTTSLE DGSLVICERS
301: LTTATGGPTG PPATSFVRAE MLPSGYLIRP CEGGGSMIHI VDHIDLDAWS VPEVLRPLYE SSKILAQKMT MAALRHIRQI AQETSGEIQY TGGRQPAVLR
401: ALSQRLCRGF NDAVSGFVDD GWTIMDSDGV EDVTIAINSS SSKFLGSQYN TLSILPTFGG VLCARASMLL QNVPPALLVR FLREHRSEWA DYGVDAYSSA
501: SLKASPYAVP CARPGGFPSS QVILPLAQTV EHEEFLEVVR LEGPAFSPED IALSRDMYLL QLCSGVDENA AGACAQLVFA PIDESFGDDA PLIPSGFRVI
601: PLEPKSDVPA ATRTLDLAST LEAGTGGSGT RPAGEIEAGN YNHRSVLTIA FQFTFESHYQ DNVAAMARQY VRSIVGSVQR VAMAIAPSRL SSQLTPKSFP
701: GSPEAVTLAR WISRSYRVHT GGDLFQVDSQ AGDAVLKQLW HHSDAIMCCS VKMNASAVFT FANQAGLDML ETTLLALQDI MLDKILDEAG RKVLLSEFSK
801: IMQQGFAYLP AGICVSSMGR PISYEQAIAW KVLNDDDSNH CLAFMFINWS FV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.