Factsheet for PGSC0003DMT400009136

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020801
PGSC0003DMT400030829
PGSC0003DMT400054421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18060.1	PGSC0003DMT400030829	AT1G30490.1	21245844
AT2G18060.1	PGSC0003DMT400054421	AT1G30490.1	21245844
AT2G18060.1	PGSC0003DMT400030829	AT2G34710.1	21245844
AT2G18060.1	PGSC0003DMT400054421	AT2G34710.1	21245844
AT2G18060.1	PGSC0003DMT400020801	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084350.2.1	Tomato	nucleus	96.54	95.99
Zm00001d048456_P001	Maize	nucleus	36.6	86.99
PGSC0003DMT400055552	Potato	cytosol, nucleus, peroxisome	33.72	79.05
Bra039915.1-P	Field mustard	nucleus	56.2	72.22
KRH76680	Soybean	nucleus	70.03	70.64
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	70.89	64.74
GSMUA_Achr8P12100_001	Banana	nucleus	59.08	61.75
AT2G18060.1	Thale cress	nucleus	64.84	61.64
CDY38177	Canola	nucleus	63.11	60.66
GSMUA_Achr11P...	Banana	nucleus	56.77	58.98
Os10t0532000-01	Rice	cytosol	54.47	55.43
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	58.21	55.04
TraesCS4D01G316800.1	Wheat	nucleus	58.21	55.04
TraesCS4B01G320300.1	Wheat	cytosol, mitochondrion, nucleus	57.64	54.5
OQU93335	Sorghum	cytosol, mitochondrion, nucleus	58.21	54.45
HORVU4Hr1G083050.3	Barley	cytosol, mitochondrion, nucleus	57.35	54.08
EER94595	Sorghum	cytosol, mitochondrion, nucleus	50.14	52.25
Zm00001d027459_P001	Maize	nucleus	56.48	51.72
PGSC0003DMT400012079	Potato	nucleus	42.07	48.99
PGSC0003DMT400067086	Potato	nucleus	46.4	48.94
PGSC0003DMT400002318	Potato	nucleus	44.09	48.42
PGSC0003DMT400029321	Potato	nucleus	40.06	44.41
PGSC0003DMT400025026	Potato	nucleus	38.9	41.67
PGSC0003DMT400031571	Potato	nucleus	40.63	38.11
PGSC0003DMT400014872	Potato	nucleus	37.46	37.36

Protein Annotations

EntrezGene:102580907	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
GO:GO:0048759	GO:GO:1901348	GO:GO:1990110	InterPro:IPR003441	InterPro:IPR036093	UniProt:M0ZVN6
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG401003552	PGSC:PGSC0003DMG401003552	EnsemblPlants:PGSC0003DMT400009136
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941	UniParc:UPI000295ABC4	RefSeq:XP_006340711.1
SEG:seg	:	:	:	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG401003552]

Coordinates

chr2:-:39632243..39635519

Molecular Weight (calculated)

40038.8 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.768

Length

347 amino acids

Sequence
(BLAST)

001: MDTNESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI RDIDLYRIEP WDLQDKCRIG YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA
101: VYNKSKLIGM RKTLVFYKGR APNGQKSDWI MHEYRLESEE NGPPQEEGWV VCRAFKKKIT GQTKTNNMVE GWESNYFYDE ATTTVSSIVD PLEYITRQPP
201: LLSNNFNMLQ NNLLCKQETS MEAAENNLNF SYTNSDQFIQ LPQLESPSLP LLKRPISSMS LVSDYNNNNN HEEDGSKNVT ADWRALDKFV ASQLSHEETT
301: LYEDDQHNCS DLGMLLLLSD RGEGPKLNEI LSSSSEDCDI GVCLFDK

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.