Factsheet for TraesCS4B01G320300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G316800.1	Wheat	nucleus	97.28	97.28
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	97.0	97.0
Zm00001d048456_P001	Maize	nucleus	37.87	95.21
HORVU4Hr1G083050.3	Barley	cytosol, mitochondrion, nucleus	95.1	94.84
OQU93335	Sorghum	cytosol, mitochondrion, nucleus	75.48	74.66
Zm00001d027459_P001	Maize	nucleus	74.11	71.77
VIT_04s0023g03110.t01	Wine grape	nucleus	58.58	64.18
KRH69806	Soybean	nucleus	57.22	58.01
Solyc02g084350.2.1	Tomato	nucleus	55.04	57.88
PGSC0003DMT400009136	Potato	nucleus	54.5	57.64
GSMUA_Achr8P12100_001	Banana	nucleus	51.5	56.93
GSMUA_Achr11P...	Banana	nucleus	51.77	56.89
Bra012065.1-P	Field mustard	nucleus	45.23	56.85
KRH08100	Soybean	nucleus	55.86	56.63
AT5G66300.1	Thale cress	nucleus	44.96	56.51
CDY45221	Canola	nucleus	45.23	56.46
CDY30778	Canola	nucleus	45.23	56.27
TraesCS2B01G627200.1	Wheat	nucleus	39.78	46.06
TraesCS2B01G627000.1	Wheat	nucleus	37.6	46.0
TraesCS2B01G403300.1	Wheat	cytosol, nucleus, peroxisome	40.6	43.95
TraesCS2B01G627100.1	Wheat	nucleus	37.33	43.63
TraesCS7B01G226600.1	Wheat	nucleus	35.97	42.31
TraesCS6B01G286200.1	Wheat	cytosol	43.32	41.73
TraesCS7B01G233300.1	Wheat	nucleus	38.42	37.9
TraesCS2B01G328300.1	Wheat	nucleus	33.79	36.9

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0048759	GO:GO:1901348	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941
EnsemblPlantsGene:TraesCS4B01G320300	EnsemblPlants:TraesCS4B01G320300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:-:611550683..611558160

Molecular Weight (calculated)

40899.6 Da

IEP (calculated)

5.226

GRAVY (calculated)

-0.710

Length

367 amino acids

Sequence
(BLAST)

001: MDSMESCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLTEHCGIG YEEQNEWYFF SFKDRKYPTG TRTNRATMAG FWKATGRDKA
101: VHERSRLIGM RKTLVFYKGR APNGQKTDWI MHEYRLETDE NAPPQEEGWV VCRAFKKRTA YPNRGMMERW GSNYSYNEVN AMSSGPFPDP NMASTYAAAA
201: QMGRGASFKE EAEQLDGAAA LQRYTSSHLV ELPQLESPSA PLPRKKARAP EEEEDAASGG SRRRPRKHAQ ADNAATTDWR ALDKFVASQL SPGGECAALE
301: ATTATTAAAA AGASSQAQAQ LDRDEDDMAA LLFLNSDGRD EMERWTGLLG SAGASVDGEL GICVFDK

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.