Factsheet for VIT_04s0023g03110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048456_P001	Maize	nucleus	38.81	89.04
CDX69209	Canola	cytosol, mitochondrion, nucleus	40.6	85.53
GSMUA_Achr8P12100_001	Banana	nucleus	65.37	65.96
GSMUA_Achr11P...	Banana	nucleus	64.18	64.37
CDY47055	Canola	nucleus	61.79	63.3
CDX69208	Canola	nucleus	63.58	62.1
CDX72580	Canola	nucleus	62.39	61.65
CDX75558	Canola	nucleus	62.69	61.22
Bra017750.1-P	Field mustard	nucleus	67.46	61.08
Bra011667.1-P	Field mustard	nucleus	67.46	60.92
AT4G36160.2	Thale cress	nucleus	68.96	60.63
TraesCS4D01G316800.1	Wheat	nucleus	64.48	58.86
OQU93335	Sorghum	cytosol, mitochondrion, nucleus	65.07	58.76
TraesCS4B01G320300.1	Wheat	cytosol, mitochondrion, nucleus	64.18	58.58
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	64.18	58.58
HORVU4Hr1G083050.3	Barley	cytosol, mitochondrion, nucleus	64.18	58.42
Os10t0532000-01	Rice	cytosol	59.1	58.06
EER94595	Sorghum	cytosol, mitochondrion, nucleus	56.12	56.46
Zm00001d027459_P001	Maize	nucleus	62.99	55.67
VIT_18s0072g01060.t01	Wine grape	nucleus	48.96	52.4
VIT_02s0154g00020.t01	Wine grape	nucleus	55.82	52.38
VIT_16s0022g00690.t01	Wine grape	cytosol, nucleus, peroxisome	54.63	50.97
VIT_19s0085g01210.t01	Wine grape	nucleus	40.3	43.27
VIT_18s0089g01120.t01	Wine grape	nucleus	41.19	38.44
VIT_15s0048g02660.t01	Wine grape	nucleus	43.28	37.56
VIT_02s0025g02710.t01	Wine grape	nucleus	44.48	36.79

Protein Annotations

EntrezGene:100243701	wikigene:100243701	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB44377	ProteinID:CCB44377.1
UniProt:F6GWP2	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0048759	GO:GO:1901348	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100243701
wikigene:LOC100243701	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF107	SUPFAM:SSF101941	UniParc:UPI00015CB55D	ArrayExpress:VIT_04s0023g03110	EnsemblPlantsGene:VIT_04s0023g03110	EnsemblPlants:VIT_04s0023g03110.t01
RefSeq:XP_002266706	RefSeq:XP_002266706.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:19680999..19683527

Molecular Weight (calculated)

38638.2 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.773

Length

335 amino acids

Sequence
(BLAST)

001: MDSMESCVPP GFRFHPTDEE LVGYYLKKKV ASQKIDLDVI RDIDLYRIEP WDLQERCRIG YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA
101: VYDKTKLIGM RKTLVFYKGR APNGQKTDWI MHEYRLESEE NGPPQAKGWV VCRAFKKRTT SQSKSIEGWD TSYFYDEPSG VSTVMDPIDY ISRQPQNYLG
201: QNFLCKQEIE ADNLNFMHAT EHFVQLPQLE SPSLPLMKRP SSVSLISENN EEEDQTRGCN NAEKVTDWRA LDKFVASQLS QEDRYEGDGV SSFGAHHNSD
301: MALLLLQSSR DEANKLNGFL NSSSDCDIGI CVFEK

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.