CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027459_P001	Maize	nucleus	88.95	87.07
HORVU4Hr1G083050.3	Barley	cytosol, mitochondrion, nucleus	76.01	76.63
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	75.47	76.29
TraesCS4D01G316800.1	Wheat	nucleus	75.2	76.02
TraesCS4B01G320300.1	Wheat	cytosol, mitochondrion, nucleus	74.66	75.48
EER94595	Sorghum	cytosol, mitochondrion, nucleus	58.76	65.47
VIT_04s0023g03110.t01	Wine grape	nucleus	58.76	65.07
GSMUA_Achr8P12100_001	Banana	nucleus	53.91	60.24
Bra012065.1-P	Field mustard	nucleus	46.63	59.25
AT5G66300.1	Thale cress	nucleus	46.63	59.25
KRH69806	Soybean	nucleus	57.68	59.12
GSMUA_Achr11P...	Banana	nucleus	53.1	58.98
CDY45221	Canola	nucleus	46.63	58.84
CDY30778	Canola	nucleus	46.63	58.64
Solyc02g084350.2.1	Tomato	nucleus	54.99	58.45
PGSC0003DMT400009136	Potato	nucleus	54.45	58.21
KRH08100	Soybean	nucleus	56.33	57.73
OQU82026	Sorghum	nucleus	43.94	47.94
KXG31125	Sorghum	nucleus	44.2	47.26
OQU75680	Sorghum	nucleus	41.51	45.43
EES13158	Sorghum	nucleus	39.08	43.54
EES14359	Sorghum	nucleus	37.47	41.49
KXG20105	Sorghum	cytosol, nucleus, plastid	37.2	38.87
EES04857	Sorghum	nucleus	34.5	37.21
EES12234	Sorghum	nucleus	34.23	36.92
KXG24274	Sorghum	nucleus	39.89	35.32
EER87784	Sorghum	cytosol, nucleus, plastid	36.66	31.78
OQU76499	Sorghum	nucleus	23.72	30.77

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:8061449	UniProt:C5X004	ProteinID:EER92945.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf
EnsemblPlants:OQU93335	ProteinID:OQU93335	ProteinID:OQU93335.1	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF107	EnsemblPlantsGene:SORBI_3001G522700	SUPFAM:SSF101941	UniParc:UPI0001A82D0A	RefSeq:XP_002465947.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:78781467..78788810

Molecular Weight (calculated)

40832.6 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.534

Length

371 amino acids

Sequence
(BLAST)

001: MDSMESCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQEHCGIG YEEQNEWYFF SYKDRKYPTG TRTNRATMAG FWKATGRDKA
101: VHDKSRLIGM RKTLVFYKGR APNGQKTDWI MHEYRLETDE NAPPQEEGWV VCRAFKKRTA YPARSMAMAW DPSYAYREVS AMGAAVAAEA AAFVDPNAAY
201: AQIRRQSNKS ARFKQEAELD GAAAALLQYS SSHLVELPQL ESPSAPLAPA NQSQASAADE VVVDGADSGR RPGKKARADK MATDWRALDK FVASQLSPAA
301: ECGGSLEAAA AAASTAAAGN VGSQLDHVED DDDMAALLFL NSDGREEAER WTGLLGPAGG DGDFGLCVFE K

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.