Factsheet for Solyc02g084350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g024070.2.1
Solyc02g069830.2.1
Solyc11g069470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18060.1	Solyc02g024070.2.1	AT1G30490.1	21245844
AT2G18060.1	Solyc02g069830.2.1	AT1G30490.1	21245844
AT2G18060.1	Solyc02g024070.2.1	AT2G34710.1	21245844
AT2G18060.1	Solyc02g069830.2.1	AT2G34710.1	21245844
AT2G18060.1	Solyc11g069470.1.1	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009136	Potato	nucleus	95.99	96.54
Zm00001d048456_P001	Maize	nucleus	36.39	86.99
Bra039915.1-P	Field mustard	nucleus	56.16	72.59
KRH76680	Soybean	nucleus	70.2	71.22
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	71.06	65.26
GSMUA_Achr8P12100_001	Banana	nucleus	59.03	62.05
AT2G18060.1	Thale cress	nucleus	64.76	61.92
CDY38177	Canola	nucleus	63.32	61.22
GSMUA_Achr11P...	Banana	nucleus	56.45	58.98
TraesCS4D01G316800.1	Wheat	nucleus	58.74	55.86
Os10t0532000-01	Rice	cytosol	54.44	55.72
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	58.45	55.59
TraesCS4B01G320300.1	Wheat	cytosol, mitochondrion, nucleus	57.88	55.04
OQU93335	Sorghum	cytosol, mitochondrion, nucleus	58.45	54.99
HORVU4Hr1G083050.3	Barley	cytosol, mitochondrion, nucleus	57.59	54.62
Solyc08g079120.1.1	Tomato	cytosol, nucleus, plastid	47.56	54.07
EER94595	Sorghum	cytosol, mitochondrion, nucleus	50.43	52.85
Zm00001d027459_P001	Maize	nucleus	56.45	51.98
Solyc03g083880.2.1	Tomato	nucleus	46.13	51.6
Solyc11g018660.1.1	Tomato	nucleus	44.41	49.84
Solyc06g065410.2.1	Tomato	nucleus	45.85	49.69
Solyc06g034340.1.1	Tomato	nucleus	46.99	48.24
Solyc10g005010.2.1	Tomato	nucleus	37.82	45.99
Solyc12g017400.1.1	Tomato	nucleus	39.54	43.26
Solyc08g008660.2.1	Tomato	nucleus	37.82	37.82
Solyc06g063430.1.1	Tomato	nucleus	34.1	37.42

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009987	GO:GO:0010200	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0048759
GO:GO:1901348	GO:GO:1990110	InterPro:IPR003441	InterPro:IPR036093	UniProt:K4BAV1	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941
EnsemblPlantsGene:Solyc02g084350.2	EnsemblPlants:Solyc02g084350.2.1	UniParc:UPI0002768A6B	SEG:seg	:	:

Description

NAC domain-containing protein 76 [Source:Projected from Arabidopsis thaliana (AT4G36160) UniProtKB/Swiss-Prot;Acc:O65508]

Coordinates

chr2:-:47463559..47466009

Molecular Weight (calculated)

40129.6 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.840

Length

349 amino acids

Sequence
(BLAST)

001: MDTNESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI RDIDLYRIEP WDLQDKCRIG YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA
101: VYNKSKLIGM RKTLVFYKGR APNGQKSDWI MHEYRLESEE NGPPQEEGWV VCRAFKKKIT GQTKSNNMVE GWESNYFYDE ATTATISSIV DPLEYITRQP
201: PNLSNNNFNN LLCKQETSMD QAAENNLNFS YTNSDQFIQL PQLESPSLPL LKRPISSMSL VSDNNNNNNN NNHDEDGSKN VTADWRALDK FVASQLSHEE
301: TTLYEDDQHN CSDLGMLLLL SDRGEGPKLN EILSSSSEDS DIGICLFDK

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.