CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11775
KRH25015
KRH29910
KRH36781
KRH43001
KRH59117

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18060.1	KRH11775	AT1G30490.1	21245844
AT2G18060.1	KRH36781	AT1G30490.1	21245844
AT2G18060.1	KRH43001	AT1G30490.1	21245844
AT2G18060.1	KRH59117	AT1G30490.1	21245844
AT2G18060.1	KRH11775	AT2G34710.1	21245844
AT2G18060.1	KRH36781	AT2G34710.1	21245844
AT2G18060.1	KRH43001	AT2G34710.1	21245844
AT2G18060.1	KRH59117	AT2G34710.1	21245844
AT2G18060.1	KRH25015	AT5G60690.1	21245844
AT2G18060.1	KRH29910	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	95.06	86.05
KRH08100	Soybean	nucleus	76.74	72.93
Bra039915.1-P	Field mustard	nucleus	56.69	72.22
KRH69806	Soybean	nucleus	75.58	71.82
Solyc02g084350.2.1	Tomato	nucleus	71.22	70.2
PGSC0003DMT400009136	Potato	nucleus	70.64	70.03
AT2G18060.1	Thale cress	nucleus	67.73	63.84
CDY38177	Canola	nucleus	65.99	62.88
GSMUA_Achr8P12100_001	Banana	nucleus	60.17	62.35
GSMUA_Achr11P...	Banana	nucleus	59.01	60.78
KRH62610	Soybean	nucleus	50.29	50.73
KRH23801	Soybean	nucleus	50.58	50.14
KRH39986	Soybean	nucleus	51.45	50.0
KRH28034	Soybean	nucleus	51.16	48.89
KRH57345	Soybean	nucleus	51.45	48.63
KRH04074	Soybean	nucleus	51.16	48.09
KRH56355	Soybean	nucleus	50.58	47.93
KRG97235	Soybean	nucleus	36.34	47.17
KRG97237	Soybean	nucleus	36.05	46.79
KRG91808	Soybean	nucleus	44.19	44.57
KRH34977	Soybean	nucleus	44.48	44.22
KRH13825	Soybean	cytosol, nucleus, peroxisome	39.53	41.72
KRH43624	Soybean	cytosol, nucleus, peroxisome	39.53	41.46
KRH23778	Soybean	nucleus	38.95	37.64
KRH40024	Soybean	nucleus	39.24	37.6
KRH47818	Soybean	nucleus	43.02	37.0
KRH06383	Soybean	nucleus	43.02	33.41

Protein Annotations

EntrezGene:100778767	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:ACUP02000636	EnsemblPlantsGene:GLYMA_01G167900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:K7K496	EnsemblPlants:KRH76680
ProteinID:KRH76680	ProteinID:KRH76680.1	ProteinID:KRH76681.1	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941	UniParc:UPI0002336C9D	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:50536073..50541103

Molecular Weight (calculated)

39587.3 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.726

Length

344 amino acids

Sequence
(BLAST)

001: MESMESCIPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI REIDLYRIEP WDLQERCRIG YDEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA
101: VYERAKLIGM RKTLVFYKGR APNGQKSDWI MHEYRLESDE NGPPQEEGWV VCRAFKKKTT GQTKTINIEG WDSSYFYEEA SGASTVVDPI ELISRQSQSF
201: VAQNFMCKQE LEADNLSCML QDPFVQLPQL ESPSLPLVKR PSTVSLVSDN NEDEDIQNRL LSNNNNTKKV TTDWRALDKF VASQLSQEVD THESNGVPSS
301: FQPHDDNHDM ALLLLQSSRD EGNRLSPFLN TSSDCDIGIC VFEK

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.