CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82038
CDX84286
CDY02297
CDY09191
CDY09572
CDY27014
CDY31519
CDY31635
CDY43661
CDY52706
CDY57624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18060.1	CDY02297	AT1G30490.1	21245844
AT2G18060.1	CDY09572	AT1G30490.1	21245844
AT2G18060.1	CDX84286	AT2G34710.1	21245844
AT2G18060.1	CDY31635	AT2G34710.1	21245844
AT2G18060.1	CDY43661	AT2G34710.1	21245844
AT2G18060.1	CDX82038	AT5G60690.1	21245844
AT2G18060.1	CDY09191	AT5G60690.1	21245844
AT2G18060.1	CDY27014	AT5G60690.1	21245844
AT2G18060.1	CDY31519	AT5G60690.1	21245844
AT2G18060.1	CDY52706	AT5G60690.1	21245844
AT2G18060.1	CDY57624	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039915.1-P	Field mustard	nucleus	74.79	100.0
CDX69209	Canola	cytosol, mitochondrion, nucleus	38.23	86.79
AT2G18060.1	Thale cress	nucleus	81.16	80.27
CDY47055	Canola	nucleus	61.77	68.2
CDX72580	Canola	nucleus	63.16	67.26
CDX69208	Canola	nucleus	62.88	66.18
CDX75558	Canola	nucleus	62.88	66.18
KRH76680	Soybean	nucleus	62.88	65.99
CDY72666	Canola	nucleus	29.64	65.64
Solyc02g084350.2.1	Tomato	nucleus	61.22	63.32
PGSC0003DMT400009136	Potato	nucleus	60.66	63.11
CDY30778	Canola	nucleus	49.86	61.02
CDY45221	Canola	nucleus	49.58	60.88
GSMUA_Achr11P...	Banana	nucleus	55.96	60.48
CDY70728	Canola	nucleus	29.64	59.78
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	62.88	59.74
GSMUA_Achr8P12100_001	Banana	nucleus	54.29	59.04
CDY35029	Canola	cytosol	30.75	53.37
CDY62781	Canola	nucleus	21.05	48.1
CDY00280	Canola	nucleus	34.07	47.31
CDX98078	Canola	nucleus	43.77	46.75
CDY26551	Canola	nucleus	43.77	46.47
CDY21041	Canola	nucleus	45.43	46.46
CDY15987	Canola	nucleus	43.21	46.02
CDY03671	Canola	nucleus	41.27	45.57
CDX82202	Canola	nucleus	41.0	45.26
CDX96362	Canola	nucleus	40.72	45.23
CDY46914	Canola	nucleus	45.15	45.15
CDY31249	Canola	nucleus	45.43	44.93
CDX72846	Canola	nucleus	40.44	44.92
CDY31835	Canola	nucleus	44.88	44.88
CDY30057	Canola	nucleus	46.54	42.64
CDY11382	Canola	cytosol, nucleus, plastid	37.67	42.24
CDX76597	Canola	cytosol, nucleus, peroxisome	37.67	40.96
CDY16776	Canola	nucleus	37.4	40.66
CDX87246	Canola	nucleus	37.67	40.48
CDY26917	Canola	nucleus	34.35	40.26
CDY25087	Canola	cytosol, nucleus, peroxisome	35.46	39.26
CDY58006	Canola	nucleus	37.67	39.08
CDY41554	Canola	nucleus	38.23	38.66
CDX80045	Canola	nucleus	38.23	38.44
CDX67870	Canola	nucleus	35.73	38.39
CDY27524	Canola	nucleus	38.5	38.19
CDX73267	Canola	cytosol	34.07	37.85
CDY30716	Canola	nucleus	37.67	37.67
CDX93819	Canola	nucleus	37.12	36.81
CDY01243	Canola	nucleus	37.4	36.39
CDY22285	Canola	nucleus	33.8	35.16
CDY71976	Canola	nucleus	33.52	34.67
CDX90756	Canola	nucleus	31.86	34.64
CDX87372	Canola	nucleus	34.35	34.44
CDY05099	Canola	nucleus	31.58	34.23
CDX88550	Canola	nucleus	34.35	34.16
CDY70056	Canola	nucleus	33.24	33.61
CDY00281	Canola	cytosol	3.32	17.91

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:A0A078HJZ1	UniProt:A0A078HJZ1	EnsemblPlants:CDY38177	ProteinID:CDY38177
ProteinID:CDY38177.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987
GO:GO:0010200	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0048759	GO:GO:1901348
GO:GO:1990110	EnsemblPlantsGene:GSBRNA2T00065483001	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941	UniParc:UPI0004EF31EF
SEG:seg	:	:	:	:	:

Description

BnaA07g02060DNAC domain-containing protein 37 [Source:Projected from Arabidopsis thaliana (AT2G18060) UniProtKB/Swiss-Prot;Acc:Q9SL41]

Coordinates

chrLK032417:-:319008..322018

Molecular Weight (calculated)

41991.2 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.808

Length

361 amino acids

Sequence
(BLAST)

001: MESCSVPPGF RFHPTDEELV GYYLRKKVAS QKIDLDVIRD IDLYKIEPWD LQERCRIGHE EQNEWYFFSH KDKKYPTGTR TNRATMTGFW KATGRDKAVY
101: DKTKLIGMRK TLVFYKGRAP NGQKSDWIIH EYRLESDENA LPQEEGWVVC RAFKKRATGQ TKNTETWSSS YFYDEAVSSG VNSIIDPTEY IYNQKHDIFG
201: KGFTCKQEIE GMVDDLNYMQ SYHQFIQLPQ LQSPSLPVMK RPSSSMSISS MDNNSNYIIS LDDEASFESV ISGENKRKNK KKQVKMIGDW RELDKFVASQ
301: LMSQDNGTSD YVGHHINHED MEMDSSLLLN ERDEENRFVS ELLNSNTDYD TGIAYLMNET I

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.