CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08392
CDY70840

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60690.1	CDY08392	AT1G64620.1	21245844
AT5G60690.1	CDY70840	AT1G64620.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	99.88	99.88
CDY52706	Canola	cytosol, nucleus, plastid	98.47	98.82
AT5G60690.1	Thale cress	cytosol, nucleus, plastid	94.71	95.61
CDY09191	Canola	cytosol	81.29	92.75
CDX99164	Canola	cytosol, nucleus, plastid	83.65	84.74
KRH29910	Soybean	cytosol, nucleus, plastid	82.47	83.25
KRH25015	Soybean	cytosol, nucleus, plastid	80.94	81.81
VIT_06s0004g02800.t01	Wine grape	nucleus	81.18	81.75
CDY31032	Canola	cytosol	72.94	80.94
CDY31031	Canola	extracellular	10.12	80.37
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	78.82	79.67
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	78.47	79.31
CDY27014	Canola	cytosol, plasma membrane	6.47	73.33
HORVU5Hr1G061410.29	Barley	cytosol	24.35	71.63
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	69.76	71.1
Os10t0480200-01	Rice	nucleus	70.12	70.95
CDY57624	Canola	extracellular	7.65	69.89
TraesCS1A01G157500.1	Wheat	nucleus	68.71	69.52
HORVU1Hr1G041790.2	Barley	nucleus	68.71	69.52
TraesCS1B01G173900.1	Wheat	nucleus	68.71	69.52
OQU93425	Sorghum	nucleus	68.59	69.24
EER94065	Sorghum	nucleus	68.12	69.09
TraesCS1D01G155200.3	Wheat	nucleus	68.12	69.09
CDX71242	Canola	peroxisome	6.82	69.05
Os03t0109400-02	Rice	nucleus	68.12	69.01
Zm00001d048527_P028	Maize	nucleus	68.47	68.79
TraesCS4D01G359600.1	Wheat	nucleus	67.18	68.14
Zm00001d027317_P015	Maize	nucleus	68.24	68.0
TraesCS5A01G549700.1	Wheat	nucleus	66.94	67.9
HORVU4Hr1G090030.9	Barley	nucleus	66.59	67.54
TraesCS4B01G385200.1	Wheat	nucleus	66.59	67.46
CDY43661	Canola	cytosol	63.41	66.3
CDY02297	Canola	nucleus	64.94	65.71
CDY09572	Canola	cytosol, nucleus, plastid	64.82	65.6
CDY31635	Canola	nucleus	65.41	65.49
CDX84286	Canola	cytosol	64.82	64.9
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	65.76	64.11
CDY47819	Canola	cytosol	62.35	63.25
CDY60592	Canola	cytosol	62.12	63.01
CDY02553	Canola	cytosol	61.88	62.99
CDY51188	Canola	nucleus	52.35	61.72
CDY69514	Canola	nucleus	45.65	61.59
CDX68901	Canola	plastid	14.59	61.39
CDY28273	Canola	nucleus	52.94	60.98
CDY45021	Canola	nucleus	52.94	60.98
CDX82038	Canola	extracellular	9.76	51.23
Zm00001d049529_P001	Maize	cytosol, plastid	11.18	50.0
CDY53980	Canola	cytosol, nucleus, peroxisome	8.82	48.39
Os03t0769800-01	Rice	plastid	4.94	17.36
Os10t0147300-02	Rice	plastid	0.94	7.34

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078H290	UniProt:A0A078H290	EnsemblPlants:CDY31519
ProteinID:CDY31519	ProteinID:CDY31519.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00047827001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF279	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EEA385	SEG:seg	:	:

Description

BnaA10g13520DBnaA10g13520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H290]

Coordinates

chrLK032274:-:33899..38491

Molecular Weight (calculated)

93059.9 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.130

Length

850 amino acids

Sequence
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TTVVNDPSCD SVVTTPQHSL RDANSPAGLL SIAEETLAEF LSKATGTAVD WVQMPGMKPG PDSVGIFAIS
201: QRCSGVAARA CGLVSLEPVK IAEILKDRPS WFRDCRSLEV FTMFPAGNGG TIELVYMQTY APTTLAPARD FWTLRYTTSL DNGSFVVCER SLSGSGAGPN
301: AASASQFVRA EMLSSGYLIR PCDGGGSIIH IVDHLNLEAW SVPDVLRPLY ESSKVVAQKM TISALRYIRQ LAQESNGELV YGLGRQPAVL RTFSQRLSRG
401: FNDAVNGFGD DGWSTMHCDG AEDIIVAINS TKHLNNMSNS LSFLGGVLCA KASMLLQNVP PAVLIRFLRE HRSEWADFNV DAYSAATLKA GSFAYPGMRP
501: TRFTGSQIIM PLGHTIEHEE MLEVVRLEGH SLAQEDAFMS RDVHLLQICT GIDENAVGAC SELIFAPINE MFPDDAPLVP SGFRVIPVDA KTGDAQDLLT
601: ANHRTLDLTS SLEVGPTPEN ASGNSSSSSS SRCILTIAFQ FPFENNLQDN VAGMACQYVR SVISSVQRVA MAISPSGISP SLGSKLSPGS PEAVTLAQWI
701: SQSYTHHLGS ELLTVDSLGS NDSVLKLLWD HQDAILCCSL KPQPVFMFAN QAGLDMLETT LVALQDITLE KIFDESGRKA LCSDFAKLMQ QGYACLPSGI
801: CLSTMGRHVT YEQAVAWKVF APAASSSENN DGNDNTLHCL AFSFVNWSFV

Best Arabidopsis Sequence Match ( AT5G60690.1 )
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV

Arabidopsis Description

REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.