CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71050
CDX80191
CDX88742
CDX98022
CDY03876
CDY09221
CDY16048
CDY19407
CDY24422
CDY26605
CDY31568
CDY36131
CDY51586

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	CDX98022	AT1G12980.1	17376809
AT1G30490.1	CDY16048	AT1G12980.1	17376809
AT1G30490.1	CDY19407	AT1G12980.1	17376809
AT1G30490.1	CDY26605	AT1G12980.1	17376809
AT1G30490.1	CDX98022	AT1G12980.1	18830673
AT1G30490.1	CDY16048	AT1G12980.1	18830673
AT1G30490.1	CDY19407	AT1G12980.1	18830673
AT1G30490.1	CDY26605	AT1G12980.1	18830673
AT1G30490.1	CDY03876	AT1G24590.1	17376809
AT1G30490.1	CDY24422	AT1G24590.1	17376809
AT1G30490.1	CDY36131	AT1G24590.1	17376809
AT1G30490.1	CDY51586	AT1G24590.1	17376809
AT1G30490.1	CDX71050	AT3G45610.1	21245844
AT1G30490.1	CDX80191	AT3G45610.1	21245844
AT1G30490.1	CDX88742	AT3G45610.1	21245844
AT1G30490.1	CDY09221	AT3G45610.1	21245844
AT1G30490.1	CDY31568	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02297	Canola	nucleus	99.05	99.05
AT1G30490.1	Thale cress	nucleus	94.76	94.65
CDY43661	Canola	cytosol	80.83	83.52
CDY31635	Canola	nucleus	83.57	82.69
CDX84286	Canola	cytosol	83.1	82.21
GSMUA_Achr2P13060_001	Banana	cytosol	7.26	72.62
Zm00001d013699_P001	Maize	cytosol	72.5	71.14
EER91178	Sorghum	nucleus	72.26	71.08
Zm00001d033246_P004	Maize	cytosol	72.26	70.91
Os03t0640800-01	Rice	plastid	72.14	70.55
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	72.38	70.53
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	72.38	70.53
GSMUA_Achr4P31660_001	Banana	cytosol	72.02	70.43
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	72.26	70.42
Os12t0612700-01	Rice	nucleus	71.07	69.82
GSMUA_Achr7P01060_001	Banana	cytosol	71.19	69.62
GSMUA_Achr5P02420_001	Banana	cytosol	71.79	68.99
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	69.29	68.79
GSMUA_Achr2P13050_001	Banana	cytosol	62.86	67.61
EES17386	Sorghum	mitochondrion	68.69	67.33
GSMUA_Achr4P28360_001	Banana	cytosol	71.9	67.11
GSMUA_Achr8P02960_001	Banana	cytosol	67.02	67.1
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	69.29	66.21
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	69.52	66.14
HORVU5Hr1G010650.1	Barley	cytosol	67.38	65.97
CDY52706	Canola	cytosol, nucleus, plastid	65.48	64.94
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	66.79	64.86
CDY31519	Canola	cytosol, nucleus, plastid	65.6	64.82
CDY31031	Canola	extracellular	8.21	64.49
HORVU0Hr1G010250.3	Barley	cytosol	57.14	64.43
CDX99164	Canola	cytosol, nucleus, plastid	64.29	64.36
CDY09191	Canola	cytosol	55.83	62.95
CDY69514	Canola	nucleus	46.79	62.38
CDY47819	Canola	cytosol	62.14	62.29
CDY02553	Canola	cytosol	61.9	62.28
CDY60592	Canola	cytosol	62.02	62.17
Zm00001d031061_P007	Maize	mitochondrion	65.95	61.97
CDY51188	Canola	nucleus	52.74	61.44
CDY45021	Canola	nucleus	53.93	61.38
CDY28273	Canola	nucleus	53.93	61.38
HORVU5Hr1G093150.2	Barley	cytosol, plastid	72.26	60.52
CDY31032	Canola	cytosol	54.17	59.4
CDX68901	Canola	plastid	13.69	56.93
CDY57624	Canola	extracellular	6.07	54.84
CDY27014	Canola	cytosol, plasma membrane	4.64	52.0
Zm00001d018824_P001	Maize	cytosol	8.1	49.63
CDX71242	Canola	peroxisome	4.88	48.81
CDY53980	Canola	cytosol, nucleus, peroxisome	7.74	41.94
CDX82038	Canola	extracellular	7.74	40.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078F944	UniProt:A0A078F944	EnsemblPlants:CDY09572
ProteinID:CDY09572	ProteinID:CDY09572.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00031186001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EDD166	SEG:seg	:	:

Description

BnaC05g23470DBnaC05g23470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F944]

Coordinates

chrLK031997:+:579351..583905

Molecular Weight (calculated)

92177.8 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.210

Length

840 amino acids

Sequence
(BLAST)

001: MMAHSMDDRD SPEKGFDSGK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILCNI EPRQIKVWFQ NRRCREKQRK ESARLQTVNR KLSAMNKLLM
101: EENDRLQKQV SHLVYENGFM KHRINTATGT TTDNGCESVV ASGQQRQQQN PTHQHPQRDA NNPAGLLSIA EETLAEFLCK ATGTAVDWVQ MIGMKPGPDS
201: IGIVAVSRNC SGIAARACGL VSLEPMKVAE ILKDRPSWFR DCRSVETLSV IPTGNGGTIE LINTQIYAPT TLAAARDFWT LRYSTSLEDG SYVVCEKSLT
301: AATGGPNGPL SSSFVRAKML SSGFLIRPCD GGGSIIHIVD HVDLDVTSVP EVLRPLYESS KILAQKMTVA ALRHARQIAQ ETSGEVQFSG GRQPAVLRTF
401: SQRLCRGFND AVNGFADDGW SPMSSDGGED ITIMINSSSS KFSGSQYGNS FLPSFGSGVL CAKASMLLQN VPPLVLIRFL REHRAEWADY GVDAYCAASL
501: RATPFAVPCV RTGGFPSNQV ILPLAQTLEH EEFLEVVRLG GHAYSPEDMG LSRDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL
601: DHKTSPNDHL SVNRTRDLAS SLDGSTKTDA ETNSRLVLTI AFQFTFDNHS RDNVATMARQ YVRNVVGSIQ RVALAITPRP GSMQFPTSPE ALTLARWISR
701: SYSIHTGANM FGADTQGCDG DTLLKQLWNH SDAILCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML DKTLDDSGRK ALCSEFAKIM QQGYANLPAG
801: ICVSSMGRPV SYEQATVWKV LDDNESNHCL AFILVNWSFL

Best Arabidopsis Sequence Match ( AT1G30490.1 )
(BLAST)

001: MMAHHSMDDR DSPDKGFDSG KYVRYTPEQV EALERVYAEC PKPSSLRRQQ LIRECPILCN IEPRQIKVWF QNRRCREKQR KESARLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSNLVYENGF MKHRIHTASG TTTDNSCESV VVSGQQRQQQ NPTHQHPQRD VNNPANLLSI AEETLAEFLC KATGTAVDWV QMIGMKPGPD
201: SIGIVAVSRN CSGIAARACG LVSLEPMKVA EILKDRPSWF RDCRCVETLN VIPTGNGGTI ELVNTQIYAP TTLAAARDFW TLRYSTSLED GSYVVCERSL
301: TSATGGPNGP LSSSFVRAKM LSSGFLIRPC DGGGSIIHIV DHVDLDVSSV PEVLRPLYES SKILAQKMTV AALRHVRQIA QETSGEVQYS GGRQPAVLRT
401: FSQRLCRGFN DAVNGFVDDG WSPMSSDGGE DITIMINSSS AKFAGSQYGS SFLPSFGSGV LCAKASMLLQ NVPPLVLIRF LREHRAEWAD YGVDAYSAAS
501: LRATPYAVPC VRTGGFPSNQ VILPLAQTLE HEEFLEVVRL GGHAYSPEDM GLSRDMYLLQ LCSGVDENVV GGCAQLVFAP IDESFADDAP LLPSGFRVIP
601: LDQKTNPNDH QSASRTRDLA SSLDGSTKTD SETNSRLVLT IAFQFTFDNH SRDNVATMAR QYVRNVVGSI QRVALAITPR PGSMQLPTSP EALTLVRWIT
701: RSYSIHTGAD LFGADSQSCG GDTLLKQLWD HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKTLDDSGR RALCSEFAKI MQQGYANLPA
801: GICVSSMGRP VSYEQATVWK VVDDNESNHC LAFTLVSWSF V

Arabidopsis Description

ATHB-9Homeobox-leucine zipper protein ATHB-9 [Source:UniProtKB/Swiss-Prot;Acc:O04292]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.