Factsheet for Os03t0640800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0594300-00
Os03t0276300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	Os02t0594300-00	AT1G12980.1	17376809
AT1G30490.1	Os02t0594300-00	AT1G12980.1	18830673
AT1G30490.1	Os03t0276300-00	AT3G45610.1	21245844
AT2G34710.1	Os03t0276300-00	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91178	Sorghum	nucleus	95.11	95.67
Zm00001d033246_P004	Maize	cytosol	95.11	95.44
Zm00001d013699_P001	Maize	cytosol	94.76	95.09
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	93.71	93.39
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	93.48	93.16
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	93.36	93.04
Os12t0612700-01	Rice	nucleus	86.15	86.55
GSMUA_Achr4P31660_001	Banana	cytosol	81.96	81.96
GSMUA_Achr5P02420_001	Banana	cytosol	82.89	81.46
GSMUA_Achr2P13060_001	Banana	cytosol	7.92	80.95
GSMUA_Achr7P01060_001	Banana	cytosol	80.33	80.33
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	78.93	80.24
GSMUA_Achr2P13050_001	Banana	cytosol	72.64	79.9
HORVU5Hr1G093150.2	Barley	cytosol, plastid	93.13	79.76
KRH11775	Soybean	cytosol, nucleus, plastid	77.07	78.25
GSMUA_Achr8P02960_001	Banana	cytosol	76.37	78.19
GSMUA_Achr4P28360_001	Banana	cytosol	81.61	77.89
KRH36781	Soybean	cytosol, nucleus, plastid	76.95	77.58
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	76.6	77.23
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	75.2	75.91
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	73.22	75.33
Solyc02g069830.2.1	Tomato	nucleus	73.57	75.06
KRH59117	Soybean	cytosol	74.39	74.91
KRH43001	Soybean	cytosol	74.04	74.91
CDY43661	Canola	cytosol	70.43	74.42
AT2G34710.1	Thale cress	cytosol	73.22	73.83
Bra005398.1-P	Field mustard	cytosol	72.53	73.38
CDY31635	Canola	nucleus	72.53	73.38
CDX84286	Canola	cytosol	72.29	73.14
AT1G30490.1	Thale cress	nucleus	71.36	72.89
Bra021926.1-P	Field mustard	cytosol	71.36	72.72
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	70.55	72.14
CDY09572	Canola	cytosol, nucleus, plastid	70.55	72.14
CDY02297	Canola	nucleus	70.55	72.14
Os10t0480200-01	Rice	nucleus	67.05	68.57
Os03t0109400-02	Rice	nucleus	64.96	66.51
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	10.36	57.42
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	10.36	57.42
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	10.36	57.42
Os01t0200300-01	Rice	cytosol, peroxisome	26.31	52.44
CDX71242	Canola	peroxisome	4.77	48.81
Solyc01g057960.1.1	Tomato	plastid	6.87	42.75
AT5G32670.1	Thale cress	cytosol, plastid	9.31	41.67
CDY53980	Canola	cytosol, nucleus, peroxisome	7.45	41.29
Os03t0769800-01	Rice	plastid	4.54	16.12
Os10t0147300-02	Rice	plastid	1.05	8.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EntrezGene:4333544	ProteinID:AAS68136.1	ProteinID:AAT85280.1
ProteinID:ABF97828.1	EMBL:AK103284	ProteinID:BAF12659.1	ProteinID:BAS85427.1	ProteinID:BAS85428.1	ProteinID:BAS85429.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	EnsemblPlantsGene:Os03g0640800
EnsemblPlants:Os03t0640800-01	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	UniProt:Q6AST1	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0000401DD8	RefSeq:XP_015632484.1	SEG:seg

Description

HOMEODOMAIN CONTAINING PROTEIN 4Class III homeodomain Leu zipper (HD-Zip III) family member, Control of plant type architecture and leaf development (Os03t0640800-01);Similar to cDNA clone:J033124M18, full insert sequence. (Os03t0640800-02);Similar to cDNA clone:J033124M18, full insert sequence. (Os03t0640800-03)

Coordinates

chr3:-:24651855..24657650

Molecular Weight (calculated)

93467.5 Da

IEP (calculated)

6.620

GRAVY (calculated)

-0.179

Length

859 amino acids

Sequence
(BLAST)

001: MAAAMVAAVH GVGRQDRSSP GGGGAPQVDT GKYVRYTPEQ VEALERVYGE CPKPSSLRRQ QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV
101: NRKLTAMNKL LMEENDRLQK QVSRLVYENG YMRQQLHNPS VATTDTSCES VVTSGQHHQQ QNPAATRPQR DANNPAGLLA IAEETLAEFL SKATGTAVDW
201: VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV AEILKDRPSW YRDCRCVDVL HVIPTGNGGT IELIYMQTYA PTTLAAPRDF WILRYTSGLE
301: DGSLVICERS LTQSTGGPSG PNTPNFVRAE VLPSGYLIRP CEGGGSMIHI VDHVDLDAWS VPEVLRPLYE SPKILAQKMT IAALRHIRQI AHESSGEMPY
401: GGGRQPAVLR TFSQRLSRGF NDAVNGFPDD GWSLMSSDGA EDVTIAFNSS PNKLVGSHVN SSQLFSAIGG GILCAKASML LQNVPPALLV RFLREHRSEW
501: ADPGVDAYSA AALRASPYAV PGLRAGGFMG SQVILPLAHT LEHEEFLEVI RLEGHSLCHD EVVLSRDMYL LQLCSGVDEN AAGACAQLVF APIDESFADD
601: APLLPSGFRV IPLDGKTDAP SATRTLDLAS TLEVGSGGTT RASSDTSSTC NTRSVLTIAF QFSYENHLRE SVAAMARQYV RTVVASVQRV AMAIAPSRLG
701: GQIETKNPPG SPEAHTLARW IGRSYRFHTG ADLLRTDSQS TDSSLKAMWQ HSDSIMCCSL KAAPVFTFAN QAGLDMLETT LIALQDISLE KILDDDGRKA
801: LCTEFPKIMQ QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL SDDDTPHCLA FMFVNWSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.