Factsheet for TraesCS5B01G378000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G185700.1
TraesCS6A01G208700.1
TraesCS6A01G233700.1
TraesCS6B01G237700.1
TraesCS6D01G192200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	TraesCS6A01G208700.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6B01G237700.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6D01G192200.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6A01G208700.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS6B01G237700.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS6D01G192200.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS1B01G185700.1	AT3G45610.1	21245844
AT1G30490.1	TraesCS6A01G233700.1	AT3G45610.1	21245844
AT2G34710.1	TraesCS1B01G185700.1	AT3G45610.1	21245844
AT2G34710.1	TraesCS6A01G233700.1	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	99.65	99.65
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	98.49	98.49
Os03t0640800-01	Rice	plastid	93.04	93.36
EER91178	Sorghum	nucleus	92.34	93.21
Zm00001d033246_P004	Maize	cytosol	92.23	92.87
Zm00001d013699_P001	Maize	cytosol	91.65	92.29
HORVU5Hr1G093150.2	Barley	cytosol, plastid	96.17	82.65
GSMUA_Achr2P13060_001	Banana	cytosol	8.0	82.14
GSMUA_Achr4P31660_001	Banana	cytosol	80.63	80.91
GSMUA_Achr5P02420_001	Banana	cytosol	81.32	80.21
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	78.54	80.12
GSMUA_Achr7P01060_001	Banana	cytosol	79.58	79.86
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	81.32	79.75
GSMUA_Achr2P13050_001	Banana	cytosol	71.11	78.49
KRH11775	Soybean	cytosol, nucleus, plastid	76.68	78.13
KRH36781	Soybean	cytosol, nucleus, plastid	76.8	77.7
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	76.45	77.35
GSMUA_Achr4P28360_001	Banana	cytosol	80.74	77.33
GSMUA_Achr8P02960_001	Banana	cytosol	74.59	76.64
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	75.06	76.03
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	73.09	75.45
KRH43001	Soybean	cytosol	74.01	75.15
KRH59117	Soybean	cytosol	74.13	74.91
Solyc02g069830.2.1	Tomato	nucleus	73.09	74.82
CDY43661	Canola	cytosol	69.37	73.55
AT2G34710.1	Thale cress	cytosol	72.16	73.0
AT1G30490.1	Thale cress	nucleus	70.88	72.65
Bra005398.1-P	Field mustard	cytosol	71.46	72.56
CDX84286	Canola	cytosol	71.35	72.44
CDY31635	Canola	nucleus	71.35	72.44
CDY02297	Canola	nucleus	70.53	72.38
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	70.53	72.38
CDY09572	Canola	cytosol, nucleus, plastid	70.42	72.26
Bra021926.1-P	Field mustard	cytosol	70.53	72.12
TraesCS1B01G173900.1	Wheat	nucleus	66.24	67.98
TraesCS4B01G385200.1	Wheat	nucleus	62.88	64.6
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	59.4	58.45
CDX71242	Canola	peroxisome	4.76	48.81
Solyc01g057960.1.1	Tomato	plastid	6.96	43.48
AT5G32670.1	Thale cress	cytosol, plastid	9.4	42.19
CDY53980	Canola	cytosol, nucleus, peroxisome	7.54	41.94

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS5B01G378000	EnsemblPlants:TraesCS5B01G378000.1
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:556177511..556182640

Molecular Weight (calculated)

93782.1 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.167

Length

862 amino acids

Sequence
(BLAST)

001: MAGAMVVHGH GGGGRDRDRD RSSPGGSGAP QVDTGKYVRY TPEQVDALER VYSECPKPSS LRRQQLIREC PILSNIEPKQ IKVWFQNRRC REKQRKEASR
101: LQTVNRKLSA MNKLLMEEND RLQKQVSRLV YENGYMRTHL NNPSVATTDT SCESVVTSGQ HQQQQNAVVP RPQRDANNPA GLLAIAEETL AEFLSKATGT
201: AVDWVQMVGM KPGPDSIGII AVSHNCSGVA ARACGLVSLE PTKVAEILKD RPSWYRDCRC VDVLQIIPTG NGGTIELIYM QTYAPTTLAA PRDFWILRYT
301: SGLEDGSLVI CERSLTQATG GPSGPNTPNF VRAEVLPSGY LIRPCEGGGS MIHIVDHVDL DAWSVPEVLR PLYESPKILA QKMTIAALRH IRQIAHESSG
401: EMPYGGGRQP AVLRTFSQRL SRGFNDAVNG FLDDGWSLMS SDGAEDVTIA INSSPNKLAV SHVNPSQMFT VIGGGVLCAK ASMLLQNVPP ALLVRFLREH
501: RSEWADPGVD AYSAAALRAS PYAVPGLRAS GFMGSQVILP LAHTLEHEEF LEVIRLEGHS LCHDEVVLSR DMYLLQLCSG VDENAAGACA QLVFAPIDES
601: FADDAPLLPS GFRVIPLDAK TDAPSATRTL DLASTLEVGP GGTRAPSDAS STSNTRSVLT IAFQFSYENH LRESVAAMAR QYVRTVVASV QRVAMAIAPS
701: RPGGQLEMKN PPGSPEAHTL ARWIGRSYRF HTGAELLCME SQSADASLKA LWQHSDSIMC CSLKAAPVFT FANQAGLDML ETTLIALQDI SLEKILDDDG
801: RKALCSEFPK IMQQGFAYLP GGVCVSSMGR PVSYEQAVAW KVLGDDDAPH CLAFMFVNWS FV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.