Factsheet for GSMUA_Achr2P13050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P17670_001
GSMUA_Achr3P19420_001
GSMUA_Achr5P12010_001
GSMUA_Achr8P12100_001
GSMUA_Achr9P01870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	GSMUA_Achr3P19420_001	AT1G12980.1	17376809
AT1G30490.1	GSMUA_Achr9P01870_001	AT1G12980.1	17376809
AT1G30490.1	GSMUA_AchrUn_...	AT1G12980.1	17376809
AT1G30490.1	GSMUA_Achr3P19420_001	AT1G12980.1	18830673
AT1G30490.1	GSMUA_Achr9P01870_001	AT1G12980.1	18830673
AT1G30490.1	GSMUA_AchrUn_...	AT1G12980.1	18830673
AT1G30490.1	GSMUA_Achr1P17670_001	AT3G45610.1	21245844
AT1G30490.1	GSMUA_Achr5P12010_001	AT3G45610.1	21245844
AT2G34710.1	GSMUA_Achr11P...	AT2G18060.1	21245844
AT2G34710.1	GSMUA_Achr8P12100_001	AT2G18060.1	21245844
AT2G34710.1	GSMUA_Achr1P17670_001	AT3G45610.1	21245844
AT2G34710.1	GSMUA_Achr5P12010_001	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P31660_001	Banana	cytosol	86.56	78.7
GSMUA_Achr4P28360_001	Banana	cytosol	88.99	77.22
GSMUA_Achr7P01060_001	Banana	cytosol	84.76	77.07
GSMUA_Achr5P02420_001	Banana	cytosol	86.04	76.89
EER91178	Sorghum	nucleus	80.15	73.3
Zm00001d013699_P001	Maize	cytosol	80.15	73.13
Zm00001d033246_P004	Maize	cytosol	79.64	72.66
Os03t0640800-01	Rice	plastid	79.9	72.64
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	77.72	71.83
HORVU0Hr1G010250.3	Barley	cytosol	68.5	71.81
GSMUA_Achr8P02960_001	Banana	cytosol	76.95	71.63
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	78.62	71.23
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	78.49	71.11
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	78.49	71.11
Os12t0612700-01	Rice	nucleus	77.34	70.64
KRH11775	Soybean	cytosol, nucleus, plastid	76.44	70.57
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	75.16	69.39
KRH36781	Soybean	cytosol, nucleus, plastid	75.03	68.78
EES17386	Sorghum	mitochondrion	75.42	68.73
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	74.78	68.63
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	74.78	68.54
KRH43001	Soybean	cytosol	73.5	67.61
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	71.7	67.07
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	74.01	66.82
HORVU5Hr1G010650.1	Barley	cytosol	73.37	66.78
Solyc02g069830.2.1	Tomato	nucleus	71.83	66.63
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	75.16	66.48
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	74.65	66.33
KRH59117	Soybean	cytosol	72.09	66.0
CDY43661	Canola	cytosol	67.61	64.94
Bra021926.1-P	Field mustard	cytosol	69.14	64.06
AT2G34710.1	Thale cress	cytosol	69.78	63.97
CDY31635	Canola	nucleus	69.53	63.96
Zm00001d031061_P007	Maize	mitochondrion	72.73	63.53
Bra005398.1-P	Field mustard	cytosol	69.01	63.49
CDX84286	Canola	cytosol	68.89	63.37
AT1G30490.1	Thale cress	nucleus	67.73	62.9
CDY09572	Canola	cytosol, nucleus, plastid	67.61	62.86
CDY02297	Canola	nucleus	67.61	62.86
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	67.61	62.86
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	66.33	62.11
HORVU5Hr1G093150.2	Barley	cytosol, plastid	78.23	60.92
GSMUA_Achr8P20090_001	Banana	cytosol	63.76	59.43
GSMUA_Achr5P06550_001	Banana	cytosol	62.74	58.4
Zm00001d018824_P001	Maize	cytosol	9.6	54.74
AT5G32670.1	Thale cress	cytosol, plastid	10.12	41.15
Solyc01g057960.1.1	Tomato	plastid	3.71	21.01
CDY53980	Canola	cytosol, nucleus, peroxisome	3.46	17.42
CDX71242	Canola	peroxisome	0.77	7.14
GSMUA_Achr2P13060_001	Banana	cytosol	0.64	5.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr2G13050_001	EnsemblPlants:GSMUA_Achr2P13050_001	EnsemblPlants:GSMUA_Achr2T13050_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0S7J6	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0002956760	SEG:seg	:	:	:	:

Description

Homeobox-leucine zipper protein HOX32 [Source:GMGC_GENE;Acc:GSMUA_Achr2G13050_001]

Coordinates

chr2:+:15305218..15310706

Molecular Weight (calculated)

85202.7 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.176

Length

781 amino acids

Sequence
(BLAST)

001: MAMVVSGKEA GKGQQQAAAM EAGKYVRYTP EQVEALERVY NECPKPSSLK RQQLIRECPI LSNIEPKQIK VWFQNRRCRE KQRKEASRLQ TVNRKLTAMN
101: KLLMEENDRL QKQVSHLVYE NGYMRQQLHN PSVATTDTSC ESVVTSGQHH HQQNPTPQHP QRDANPAGLL AIAEETLAEF LSKATGTAVD WVQMVGMKPG
201: PDSIGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS WYRDCRCLDV LTVIPAGNGG NIELIYMQTY APTTLAVARD FWTLRYTTAL EDGSLVICER
301: SLTPATGGPA GPPAPNFVRA EMLPSGYLIR PCEGGGSMIH IVDHVDLDPW SVPEVLRPLY ESPKILAQKT TIAALRYLTQ IAQEISGEVP YGGGRQPAVL
401: RAFSQRLSRG FNDAVNGFSD DGWSLLGSDG VEDVTIAINS SPNKLLGSHA NPSALYSTLG GGILCAKASM LLQNVPPAIL VRFLREHRSE WADCGVDAYS
501: AASLRANPYA VPGVRASTGF SGSQVILPLA HTAEHEEFLE VIRLEGHGFN QDDVILSRDM YMLQLCSGVD ESAVGACAQL VFAPIDESFD DDLPLLPSGF
601: RVIPLDPKTD SPATTRTLDL ASMLEIGSGA TARSVNETAS STYNLRSVLT IAFQFTYENH LRDNVAAMAR QYVRSVVASV QRVAMAIAPS RPGCQIGVKH
701: PPGSPEAHTL AQWISRSYRA HSGVELFQVD LQANDSLLKL LWHHPDAVMC CSLKASDTTY LYTFLTCAMI DNLSDTDAVN T

Best Arabidopsis Sequence Match ( AT1G30490.1 )
(BLAST)

001: MMAHHSMDDR DSPDKGFDSG KYVRYTPEQV EALERVYAEC PKPSSLRRQQ LIRECPILCN IEPRQIKVWF QNRRCREKQR KESARLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSNLVYENGF MKHRIHTASG TTTDNSCESV VVSGQQRQQQ NPTHQHPQRD VNNPANLLSI AEETLAEFLC KATGTAVDWV QMIGMKPGPD
201: SIGIVAVSRN CSGIAARACG LVSLEPMKVA EILKDRPSWF RDCRCVETLN VIPTGNGGTI ELVNTQIYAP TTLAAARDFW TLRYSTSLED GSYVVCERSL
301: TSATGGPNGP LSSSFVRAKM LSSGFLIRPC DGGGSIIHIV DHVDLDVSSV PEVLRPLYES SKILAQKMTV AALRHVRQIA QETSGEVQYS GGRQPAVLRT
401: FSQRLCRGFN DAVNGFVDDG WSPMSSDGGE DITIMINSSS AKFAGSQYGS SFLPSFGSGV LCAKASMLLQ NVPPLVLIRF LREHRAEWAD YGVDAYSAAS
501: LRATPYAVPC VRTGGFPSNQ VILPLAQTLE HEEFLEVVRL GGHAYSPEDM GLSRDMYLLQ LCSGVDENVV GGCAQLVFAP IDESFADDAP LLPSGFRVIP
601: LDQKTNPNDH QSASRTRDLA SSLDGSTKTD SETNSRLVLT IAFQFTFDNH SRDNVATMAR QYVRNVVGSI QRVALAITPR PGSMQLPTSP EALTLVRWIT
701: RSYSIHTGAD LFGADSQSCG GDTLLKQLWD HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKTLDDSGR RALCSEFAKI MQQGYANLPA
801: GICVSSMGRP VSYEQATVWK VVDDNESNHC LAFTLVSWSF V

Arabidopsis Description

ATHB-9Homeobox-leucine zipper protein ATHB-9 [Source:UniProtKB/Swiss-Prot;Acc:O04292]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.