Factsheet for TraesCS5D01G052300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G185700.1
TraesCS6A01G208700.1
TraesCS6A01G233700.1
TraesCS6B01G237700.1
TraesCS6D01G192200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	TraesCS6A01G208700.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6B01G237700.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6D01G192200.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6A01G208700.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS6B01G237700.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS6D01G192200.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS1B01G185700.1	AT3G45610.1	21245844
AT1G30490.1	TraesCS6A01G233700.1	AT3G45610.1	21245844
AT2G34710.1	TraesCS1B01G185700.1	AT3G45610.1	21245844
AT2G34710.1	TraesCS6A01G233700.1	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	94.79	98.94
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	95.58	96.02
HORVU5Hr1G010650.1	Barley	cytosol	90.49	93.12
HORVU0Hr1G010250.3	Barley	cytosol	76.22	90.34
Os12t0612700-01	Rice	nucleus	84.37	87.13
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	80.07	82.02
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	72.48	75.74
GSMUA_Achr4P31660_001	Banana	cytosol	73.61	75.67
GSMUA_Achr2P13050_001	Banana	cytosol	66.48	75.16
KRH11775	Soybean	cytosol, nucleus, plastid	71.8	74.94
GSMUA_Achr7P01060_001	Banana	cytosol	72.37	74.39
GSMUA_Achr5P02420_001	Banana	cytosol	73.61	74.37
KRH36781	Soybean	cytosol, nucleus, plastid	71.69	74.3
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	70.55	73.12
GSMUA_Achr8P02960_001	Banana	cytosol	68.86	72.47
KRH43001	Soybean	cytosol	69.08	71.85
GSMUA_Achr4P28360_001	Banana	cytosol	73.16	71.78
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	69.08	71.68
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	67.61	71.5
KRH59117	Soybean	cytosol	68.97	71.4
CDY43661	Canola	cytosol	65.57	71.22
Solyc02g069830.2.1	Tomato	nucleus	67.72	71.02
Bra021926.1-P	Field mustard	cytosol	67.16	70.34
Bra005398.1-P	Field mustard	cytosol	67.5	70.2
CDY31635	Canola	nucleus	67.38	70.08
AT2G34710.1	Thale cress	cytosol	67.5	69.95
CDX84286	Canola	cytosol	67.16	69.85
AT1G30490.1	Thale cress	nucleus	66.48	69.8
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	66.14	69.52
CDY02297	Canola	nucleus	66.14	69.52
CDY09572	Canola	cytosol, nucleus, plastid	66.14	69.52
GSMUA_Achr2P13060_001	Banana	cytosol	6.57	69.05
TraesCS1D01G155200.3	Wheat	nucleus	61.61	64.92
TraesCS4D01G359600.1	Wheat	nucleus	59.8	63.01
TraesCS3D01G141500.2	Wheat	nucleus	56.17	56.24
CDX71242	Canola	peroxisome	4.42	46.43
AT5G32670.1	Thale cress	cytosol, plastid	8.72	40.1
Solyc01g057960.1.1	Tomato	plastid	6.12	39.13
CDY53980	Canola	cytosol, nucleus, peroxisome	6.8	38.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS5D01G052300	EnsemblPlants:TraesCS5D01G052300.1
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:50483246..50488859

Molecular Weight (calculated)

95738.8 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.138

Length

883 amino acids

Sequence
(BLAST)

001: MTRHRPWPPS HPPPPHPLPL RVVAAAPQAT GSGAGKKMAR LSPGAAAPQV DTGKYVRYTP EQVEALERVY NECPKPSSLR RQQIIRDCPI LCNIEPKQIK
101: VWFQNRRCRE KQRKESSRMQ TVNRKLTAMN KLLMEENDRL QKQVSRLVYE NASVKSLKTK IHKASAATTD TSCESVVTSG QQQALAAPRP QRDANNPAGL
201: LAIGEETLTA FLSKATGTAV EWVQMMGMKP GPDSIGIIAV SHNCIGVAAR ACGLVSLEPT KVAEILKDRP SWYRDCRCVD ILHVFPTGNG GTIELIYMQT
301: YAPTTLAAPR DFWTLRYTCG LDDGSLVICE RSLTQSTGGP SGPNTPGFIR AEVLPSGYLI RPCEGGGSMI HIVDHVDLDA WSVPEVLRPL YESPKIVAQK
401: MTIAALRHIR QIAHESSGEI PYGAGRQPAV LRTFSQRLSR GFNDAVSGFP DDGWSLLTSD GAEDITITVN SSPNKLVGSH ISPSPLFSAI GGGILCAKAS
501: MLVQDVPPAL LVRFLREHRS EWADPGVDAY SAASLRASPY AVPGLRAGGF MGNQVILPLA HTLEHEEFLE VLRLEGHGFS HEEVLLARDM YLLQLCSGVD
601: ENASGACAQL VFAPIDESFA DDAPLLPSGF RVIPLDTKTD VPSATRTLDL ASALEVGSGG ALRGSGDSPG GCSTRSVLTI AFQFSFENHL RESVAAMARQ
701: YVRAVMASVQ RVAMAIAPSR LGSQIQLKHP PGSPEALTLA SWIGRSYRAH TGEEIRWSDT EEADSPLKLL WNHSDAILCC SLKPAPMFTF GNNAALDMLE
801: TTLVNLQDIS LEAILDDEGR KALCAEFSKV MQQGFAYLPG GVCKSSMGRQ ASYEQAVAWK VVGDDVAGAP HCLAFMFVNW TFL

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.