Factsheet for Bra005398.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002504.1-P
Bra006675.1-P
Bra020261.1-P
Bra027722.1-P
Bra039915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34710.1	Bra027722.1-P	AT1G64620.1	21245844
AT2G34710.1	Bra039915.1-P	AT2G18060.1	21245844
AT2G34710.1	Bra002504.1-P	AT3G45610.1	21245844
AT2G34710.1	Bra006675.1-P	AT3G45610.1	21245844
AT2G34710.1	Bra020261.1-P	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31635	Canola	nucleus	98.59	98.59
AT2G34710.1	Thale cress	cytosol	93.64	93.31
Bra021926.1-P	Field mustard	cytosol	90.34	90.98
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	82.92	83.81
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	77.03	77.4
KRH11775	Soybean	cytosol, nucleus, plastid	76.91	77.19
KRH36781	Soybean	cytosol, nucleus, plastid	77.03	76.76
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	76.44	76.17
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	75.27	75.09
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	72.91	74.13
Solyc02g069830.2.1	Tomato	nucleus	73.26	73.87
GSMUA_Achr2P13060_001	Banana	cytosol	7.3	73.81
KRH43001	Soybean	cytosol	73.5	73.5
KRH59117	Soybean	cytosol	73.5	73.15
Os03t0640800-01	Rice	plastid	73.38	72.53
EER91178	Sorghum	nucleus	72.91	72.48
Zm00001d033246_P004	Maize	cytosol	73.03	72.43
Zm00001d013699_P001	Maize	cytosol	72.79	72.2
GSMUA_Achr4P31660_001	Banana	cytosol	72.91	72.06
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	72.67	71.58
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	72.67	71.58
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	72.56	71.46
Os12t0612700-01	Rice	nucleus	71.5	70.99
GSMUA_Achr5P02420_001	Banana	cytosol	72.79	70.71
GSMUA_Achr7P01060_001	Banana	cytosol	71.38	70.55
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	70.08	70.33
GSMUA_Achr2P13050_001	Banana	cytosol	63.49	69.01
GSMUA_Achr8P02960_001	Banana	cytosol	68.2	69.01
EES17386	Sorghum	mitochondrion	69.14	68.49
GSMUA_Achr4P28360_001	Banana	cytosol	71.73	67.67
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	70.2	67.5
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	69.61	67.24
HORVU5Hr1G010650.1	Barley	cytosol	67.73	67.02
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	67.73	66.47
HORVU0Hr1G010250.3	Barley	cytosol	57.6	65.64
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	63.72	64.95
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	65.02	64.94
Bra020236.1-P	Field mustard	nucleus	63.49	63.71
Bra018948.1-P	Field mustard	cytosol	62.78	63.6
Bra014315.1-P	Field mustard	cytosol	62.43	63.55
Zm00001d031061_P007	Maize	mitochondrion	66.55	63.2
Bra034539.1-P	Field mustard	nucleus	61.6	62.86
Bra011392.1-P	Field mustard	cytosol	61.48	62.67
HORVU5Hr1G093150.2	Barley	cytosol, plastid	72.56	61.42
Bra030088.1-P	Field mustard	mitochondrion	7.77	54.1
Zm00001d018824_P001	Maize	cytosol	8.13	50.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra005398	EnsemblPlants:Bra005398.1	EnsemblPlants:Bra005398.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4CMG0	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0002548001	SEG:seg	:	:	:	:

Description

AT2G34710 (E=0.0) PHB, ATHB14, ATHB-14, PHB-1D | PHB (PHABULOSA); DNA binding / transcription factor

Coordinates

chrA05:+:5242686..5247047

Molecular Weight (calculated)

92979.6 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.210

Length

849 amino acids

Sequence
(BLAST)

001: MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME
101: ENDRLQKQVS HLVYENGHMK HQLHTASGTT TDNSCESVVV SGQQHQQQNS NHPQHLQRDA NNPAGLLSIA EEALAEFLSK ATGTAVDWVQ MIGMKPGPDS
201: IGIVSISRNC SGIAARACGL VSLEPMKVAE ILKDRQSWLR DCRCVDTLSV IPAGNGGTIE LIYTQMYAPT ILAAARDFWT LRYSTCLEDG SYVVCERSLT
301: STTGGPNGPP SSSFVRAEMR PSGFLIRPCD GGGSIVHIVD HVDLDAWSVP EVMRPLYESS KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF
401: SQKLCRGFND AVNGFVDDGW SPLGSNDGAE DISVMINLSP GKFGGPSHYG SSFLPSFGSG VLCAKASMLL ENVPSAVLVR FLREHRSEWA DYGVDAYAAA
501: SLRASPFAVP CARAGGFPSN QVILPLAQTV EHEEFLEVVR LEGHAYSPED MGLARDMYLL QLCSGVDENV VGGCAQLVFA PIDESFADDA PLLPSGFRVI
601: PLEHKSTPNG ASANRTLDLA SALEGSTRQG SEADTNGCNF RSVVTIAFQF TFDNHTRDNV ASMARQYVRS IVGSIQRVAL AIAPRPGSSI SPVSAPTSPE
701: ALTLVRWISR SYRVHTGADL FGSDSQTSGD TLLRQLWNHT DAILCCSLKT NASPVFTFAN QTGLDMLETT LVALQDIMLD KTLDESGRKA LCSEFPKIMQ
801: QGYAHLPAGV CASSMGRLVS YEQATVWKVL EDDESNHCLA FMFVNWSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.