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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002458.1-P
Bra005398.1-P
Bra020236.1-P
Bra021926.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G45610.1 Bra002458.1-P AT5G60690.1 21245844
AT3G45610.1 Bra020236.1-P AT5G60690.1 21245844
AT5G60200.1 Bra005398.1-P AT2G34710.1 21245844
AT5G60200.1 Bra021926.1-P AT2G34710.1 21245844
AT5G60200.1 Bra002458.1-P AT5G60690.1 21245844
AT5G60200.1 Bra020236.1-P AT5G60690.1 21245844
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88742 Canola nucleus 99.64 99.64
Bra020261.1-P Field mustard nucleus 72.56 84.45
Bra002504.1-P Field mustard nucleus 76.9 82.56
AT5G60200.1 Thale cress nucleus 76.53 82.49
AT3G45610.1 Thale cress nucleus 55.96 63.27
Bra009587.1-P Field mustard nucleus 19.13 29.94
Bra035696.1-P Field mustard nucleus 25.27 27.34
PGSC0003DMT400058729 Potato nucleus 16.97 23.86
Bra012804.1-P Field mustard nucleus 20.58 23.65
Bra017906.1-P Field mustard nucleus 21.3 23.32
Bra012277.1-P Field mustard nucleus 21.66 22.99
Bra006923.1-P Field mustard nucleus 19.86 22.73
Bra037401.1-P Field mustard nucleus 23.83 22.15
Bra035956.1-P Field mustard nucleus 21.3 22.1
KRH50082 Soybean nucleus 22.74 21.88
Bra024399.1-P Field mustard nucleus 23.1 20.91
Bra010884.1-P Field mustard nucleus 22.02 20.68
Bra032891.1-P Field mustard nucleus 22.02 20.54
Bra013003.1-P Field mustard nucleus 21.66 20.41
Bra014418.1-P Field mustard nucleus 22.74 20.32
GSMUA_Achr1P17670_001 Banana nucleus 15.88 20.28
Bra031853.1-P Field mustard nucleus 21.66 19.74
VIT_00s0652g00010.t01 Wine grape nucleus 20.94 19.66
KRH20417 Soybean nucleus 23.1 19.51
Bra010136.1-P Field mustard nucleus 25.63 19.29
Bra007156.1-P Field mustard nucleus 22.74 19.27
Bra019247.1-P Field mustard nucleus 23.83 19.24
Bra027722.1-P Field mustard nucleus 22.38 19.14
Bra035873.1-P Field mustard nucleus 23.47 19.12
Bra000008.1-P Field mustard nucleus 20.22 19.11
Bra029352.1-P Field mustard nucleus 19.13 19.06
Bra013758.1-P Field mustard nucleus 23.1 19.05
Bra037822.1-P Field mustard nucleus 19.49 19.01
Bra017171.1-P Field mustard nucleus 20.94 18.77
Bra000429.1-P Field mustard nucleus 24.91 18.7
Bra005181.1-P Field mustard nucleus 21.66 18.46
Bra030089.1-P Field mustard nucleus 19.86 18.46
Solyc02g078620.1.1 Tomato nucleus 18.77 18.31
Bra014752.1-P Field mustard nucleus 23.1 18.29
Bra030696.1-P Field mustard nucleus 22.02 18.26
Zm00001d029512_P001 Maize nucleus 23.1 18.23
Bra004525.1-P Field mustard nucleus 22.74 17.9
Bra010548.1-P Field mustard nucleus 22.38 17.61
Bra039272.1-P Field mustard nucleus, plastid 22.74 17.5
GSMUA_Achr5P12010_001 Banana nucleus 22.38 17.46
Bra035667.1-P Field mustard nucleus 20.94 16.86
Bra031588.1-P Field mustard nucleus 18.05 15.77
Bra005725.1-P Field mustard nucleus 22.74 15.63
Bra028872.1-P Field mustard nucleus 21.66 14.78
TraesCS1B01G185700.1 Wheat cytosol 5.42 6.91
TraesCS6A01G233700.1 Wheat cytosol, mitochondrion, nucleus 5.05 6.45
Bra009588.1-P Field mustard plastid 3.25 5.06
HORVU2Hr1G047750.4 Barley plastid 2.89 3.54
Os03t0276300-00 Rice cytosol 1.44 2.88
Protein Annotations
MapMan:15.5.1.5EnsemblPlantsGene:Bra006675EnsemblPlants:Bra006675.1EnsemblPlants:Bra006675.1-PGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR003851UniProt:M4CR34PFAM:PD007478PFAM:PF02701ScanProsite:PS01361PFscan:PS50884
PANTHER:PTHR31992PANTHER:PTHR31992:SF78UniParc:UPI00025401BCInterPro:Znf_Dof::
Description
AT5G60200 (E=1e-120) | Dof-type zinc finger domain-containing protein
Coordinates
chrA03:-:4567529..4569812
Molecular Weight (calculated)
30183.2 Da
IEP (calculated)
8.560
GRAVY (calculated)
-0.697
Length
277 amino acids
Sequence
(BLAST)
001: MQPHHESYTF SGRTLCDNPT DLRSFSHSAL MDHLLQQQDV FGNYNKAREA MGGSCLDHDQ KKPSPATGAA RPQPPELAVR CPRCDSTNTK FCYYNNSSLS
101: QPRYFCKSCR RYWTKGGTLR NIPVGGGCRK NKRSATRSLR TTPEPASHDG KAFSGGIFGG YSNNDHIDLS LAFALLNKQP PGSSSQLGFG SSHQSDMESV
201: FGTSQQKGNA GYAFGSGSSG LDMAMSDPNK VLWGFPWQMN GESFGMMNMG GGGHVDQLDS GKEIWTNMNY INSGALM
Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)
001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
Arabidopsis Description
DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.