Factsheet for Bra035873.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16754	Canola	nucleus	98.82	98.82
Bra010136.1-P	Field mustard	nucleus	87.65	80.98
AT5G62940.1	Thale cress	nucleus	87.94	80.38
Solyc06g071480.2.1	Tomato	nucleus	40.29	49.1
PGSC0003DMT400069680	Potato	nucleus	40.0	48.57
VIT_17s0000g08290.t01	Wine grape	nucleus	43.53	48.05
KRH63537	Soybean	nucleus	45.88	45.35
GSMUA_Achr10P...	Banana	nucleus	31.47	41.47
Zm00001d017788_P001	Maize	nucleus	33.24	39.24
EES05649	Sorghum	nucleus	33.53	38.64
Zm00001d051577_P001	Maize	nucleus	32.65	37.37
GSMUA_Achr2P23020_001	Banana	nucleus	30.0	37.09
TraesCS6D01G254200.1	Wheat	nucleus	31.47	34.97
TraesCS6B01G301500.1	Wheat	nucleus	31.18	34.64
TraesCS6A01G274000.1	Wheat	nucleus	31.18	34.64
Os02t0707200-00	Rice	nucleus	29.12	34.38
Bra009587.1-P	Field mustard	nucleus	15.59	29.94
Bra020261.1-P	Field mustard	nucleus	19.41	27.73
Bra002504.1-P	Field mustard	nucleus	20.29	26.74
Bra014418.1-P	Field mustard	nucleus	23.82	26.13
Bra037401.1-P	Field mustard	nucleus	22.35	25.5
Bra000008.1-P	Field mustard	nucleus	21.47	24.91
GSMUA_Achr1P20550_001	Banana	nucleus	19.71	24.81
Bra004525.1-P	Field mustard	nucleus	25.59	24.72
Bra027722.1-P	Field mustard	nucleus	23.53	24.69
Bra035696.1-P	Field mustard	nucleus	18.53	24.61
Bra012804.1-P	Field mustard	nucleus	17.35	24.48
Bra010548.1-P	Field mustard	nucleus	25.29	24.43
Bra019247.1-P	Field mustard	nucleus	24.41	24.2
Bra000429.1-P	Field mustard	nucleus	26.18	24.12
Bra013758.1-P	Field mustard	nucleus	23.82	24.11
Bra012277.1-P	Field mustard	nucleus	18.24	23.75
Bra017906.1-P	Field mustard	nucleus	17.65	23.72
Bra035956.1-P	Field mustard	nucleus	18.53	23.6
Bra006675.1-P	Field mustard	nucleus	19.12	23.47
Bra005181.1-P	Field mustard	nucleus	22.35	23.38
Bra017171.1-P	Field mustard	nucleus	21.18	23.3
Bra006923.1-P	Field mustard	nucleus	16.47	23.14
Bra039272.1-P	Field mustard	nucleus, plastid	24.41	23.06
Bra013003.1-P	Field mustard	nucleus	19.12	22.11
Bra037822.1-P	Field mustard	nucleus	17.94	21.48
Bra014752.1-P	Field mustard	nucleus	22.06	21.43
Bra029352.1-P	Field mustard	nucleus	17.35	21.22
Bra031853.1-P	Field mustard	nucleus	18.24	20.39
Bra030696.1-P	Field mustard	nucleus	20.0	20.36
Bra007156.1-P	Field mustard	nucleus	19.12	19.88
Bra032891.1-P	Field mustard	nucleus	17.06	19.53
Bra035667.1-P	Field mustard	nucleus	19.71	19.48
Bra010884.1-P	Field mustard	nucleus	16.76	19.32
Bra024399.1-P	Field mustard	nucleus	17.06	18.95
Bra030089.1-P	Field mustard	nucleus	16.18	18.46
Bra031588.1-P	Field mustard	nucleus	15.29	16.4
Bra005725.1-P	Field mustard	nucleus	19.12	16.13
Bra028872.1-P	Field mustard	nucleus	19.12	16.01
Bra009588.1-P	Field mustard	plastid	2.35	4.49

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra035873	EnsemblPlants:Bra035873.1	EnsemblPlants:Bra035873.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4F473	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF80	UniParc:UPI0002542104	InterPro:Znf_Dof	SEG:seg	:

Description

AT5G62940 (E=7e-098) | Dof-type zinc finger domain-containing protein

Coordinates

chrA09:-:3198516..3200005

Molecular Weight (calculated)

36650.7 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.659

Length

340 amino acids

Sequence
(BLAST)

001: MGLTSLQACM DSDWLQEAES SGGSMLDSTT TSPSAADILA ACSTRPQASA MVVAAAAMMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSPSSKKPN IVTSDLMALA HSHQNYQNAS LGFQHFGGNG MMGSYTAPDH SNVGYLESKY GGLLSQSPRP
201: IDFLDSKFDL MGVNNNNLVM VDHGSNGDHH HNLHNNIGGG GLMDISACQR LMLSNYDHHH YNHHEDNQRV TSIMDVKPSP KLLSLDWQQE QGFSEGSGNG
301: GGGRSDGGGY AGGGYINGLG SSWNGLMNGY GSSTKTNSLV

Best Arabidopsis Sequence Match ( AT5G62940.1 )
(BLAST)

001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV

Arabidopsis Description

DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.