Factsheet for Bra024399.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08775	Canola	nucleus	60.13	93.88
Bra037822.1-P	Field mustard	nucleus	79.08	85.21
Bra031853.1-P	Field mustard	nucleus	83.66	84.21
AT5G65590.1	Thale cress	nucleus	84.31	81.65
KRH74458	Soybean	nucleus	39.87	36.2
KRH39485	Soybean	nucleus	38.89	34.8
Solyc11g010940.1.1	Tomato	nucleus	40.52	33.07
PGSC0003DMT400041580	Potato	nucleus	40.2	32.54
KRG99513	Soybean	nucleus	39.22	32.52
KRH45516	Soybean	nucleus	42.48	32.26
Bra009587.1-P	Field mustard	nucleus	16.34	28.25
Bra020261.1-P	Field mustard	nucleus	19.61	25.21
Bra002504.1-P	Field mustard	nucleus	20.26	24.03
Solyc02g090310.1.1	Tomato	nucleus	19.93	23.46
Bra030089.1-P	Field mustard	nucleus	22.55	23.15
Bra006675.1-P	Field mustard	nucleus	20.91	23.1
Bra012804.1-P	Field mustard	nucleus	17.97	22.82
Bra010884.1-P	Field mustard	nucleus	21.9	22.71
Bra035696.1-P	Field mustard	nucleus	18.95	22.66
Bra032891.1-P	Field mustard	nucleus	21.57	22.22
PGSC0003DMT400025984	Potato	nucleus	20.26	22.14
Bra035956.1-P	Field mustard	nucleus	19.28	22.1
GSMUA_Achr10P...	Banana	nucleus	20.91	21.92
Bra013003.1-P	Field mustard	nucleus	20.91	21.77
VIT_00s0218g00040.t01	Wine grape	nucleus	23.86	21.6
Bra030696.1-P	Field mustard	nucleus	23.53	21.56
HORVU5Hr1G097600.1	Barley	nucleus, plastid	16.34	21.55
GSMUA_Achr9P09650_001	Banana	nucleus	21.24	21.52
GSMUA_Achr8P02840_001	Banana	nucleus	21.57	21.5
Bra006923.1-P	Field mustard	nucleus	16.99	21.49
Bra017171.1-P	Field mustard	nucleus	21.57	21.36
Bra005181.1-P	Field mustard	nucleus	22.55	21.23
Bra029352.1-P	Field mustard	nucleus	18.95	20.86
Bra000008.1-P	Field mustard	nucleus	19.93	20.82
Bra012277.1-P	Field mustard	nucleus	17.65	20.69
Bra014752.1-P	Field mustard	nucleus	23.53	20.57
Bra017906.1-P	Field mustard	nucleus	16.99	20.55
KRH28526	Soybean	nucleus	22.55	20.35
KRH76935	Soybean	nucleus	22.22	20.24
Bra007156.1-P	Field mustard	nucleus	21.57	20.18
Bra035667.1-P	Field mustard	nucleus	22.55	20.06
VIT_00s0253g00060.t01	Wine grape	nucleus	22.88	19.89
Bra037401.1-P	Field mustard	nucleus	19.28	19.8
KRH04709	Soybean	nucleus	22.55	19.6
GSMUA_Achr9P26560_001	Banana	nucleus	19.93	19.24
Bra031588.1-P	Field mustard	nucleus	19.61	18.93
Bra005725.1-P	Field mustard	nucleus	24.51	18.61
Bra027722.1-P	Field mustard	nucleus	19.28	18.21
Os03t0764900-01	Rice	nucleus	20.91	17.83
Zm00001d034163_P001	Maize	nucleus	20.59	17.45
KXG37485	Sorghum	nucleus	21.57	17.37
Bra028872.1-P	Field mustard	nucleus	22.88	17.24
Bra035873.1-P	Field mustard	nucleus	18.95	17.06
TraesCS5B01G406500.1	Wheat	nucleus	21.24	17.02
Bra013758.1-P	Field mustard	nucleus	18.63	16.96
TraesCS5D01G412000.1	Wheat	nucleus	20.91	16.84
Zm00001d013200_P001	Maize	nucleus, plastid	20.26	16.8
TraesCS5A01G401800.1	Wheat	nucleus	20.91	16.8
Bra014418.1-P	Field mustard	nucleus	16.99	16.77
Bra004525.1-P	Field mustard	nucleus	19.28	16.76
Bra039272.1-P	Field mustard	nucleus, plastid	19.61	16.67
HORVU5Hr1G097620.1	Barley	nucleus	20.59	16.32
Bra019247.1-P	Field mustard	nucleus	17.97	16.04
Bra000429.1-P	Field mustard	nucleus	19.28	15.99
Bra010548.1-P	Field mustard	nucleus	18.3	15.91
Bra010136.1-P	Field mustard	nucleus	18.3	15.22
Bra009588.1-P	Field mustard	plastid	6.86	11.8

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra024399	EnsemblPlants:Bra024399.1	EnsemblPlants:Bra024399.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4E6J5	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF82	UniParc:UPI000253F56F	InterPro:Znf_Dof	SEG:seg	:

Description

AT5G65590 (E=7e-118) | Dof-type zinc finger domain-containing protein

Coordinates

chrA06:-:15508564..15509484

Molecular Weight (calculated)

33938.3 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.864

Length

306 amino acids

Sequence
(BLAST)

001: MSSHTNLHSP KPDHRTTGTP HTKKPPSSST SQDQQTLKCP RCKSSNTKFC YYNNSSLSQP RHFCKACRRY WTRGGALRNV PIGGGCRKTK KSFKPNAVAT
101: PSSSQRFFSS IMEDSSKFFP PPTTMDFQLA GLSLNKINDL QLMNNQEVLG LRPMDQVETT PVDVGSGLSL MGFGDYSNNN HSTGTFTTAG GTDGNLATSI
201: ETLSSLNQDL HWRLQQQRMA MLFGSSKEET VVVERPQPIL YRNLDIVNSS QSPTKKGDNQ TEWYFGNNNN NNDNEGVANN NNTGGSEQWN NGVQAWTDLN
301: HYDALP

Best Arabidopsis Sequence Match ( AT5G65590.1 )
(BLAST)

001: MSSHTNLPSP KPVPKPDHRI SGTSQTKKPP SSSVAQDQQN LKCPRCNSPN TKFCYYNNYS LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPN
101: SSMNTLPSSS SSQRFFSSIM EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMMSSGRENT PVDVGSGLSL MGFGDFNNNH SPTGFTTAGA
201: SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV VVERPQPILY RNLEIVNSSS PSSPTKKGDN QTEWYFGNNS DNEGVISNNA NTGGGGSEWN
301: NGIQAWTDLN HYNALP

Arabidopsis Description

DOF5.7SCAP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.