Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041580 | Potato | nucleus | 94.93 | 94.18 |
| KRH74458 | Soybean | nucleus | 54.13 | 60.24 |
| KRH39485 | Soybean | nucleus | 54.13 | 59.36 |
| Bra037822.1-P | Field mustard | nucleus | 32.0 | 42.25 |
| CDY70312 | Canola | nucleus | 32.0 | 42.25 |
| AT5G65590.1 | Thale cress | nucleus | 35.2 | 41.77 |
| CDY70838 | Canola | nucleus | 33.87 | 41.5 |
| CDY33948 | Canola | nucleus | 33.07 | 41.06 |
| Bra024399.1-P | Field mustard | nucleus | 33.07 | 40.52 |
| Bra031853.1-P | Field mustard | nucleus | 32.53 | 40.13 |
| CDY37834 | Canola | nucleus | 32.27 | 39.8 |
| CDX81292 | Canola | nucleus | 29.33 | 39.01 |
| CDY08775 | Canola | nucleus | 20.0 | 38.27 |
| KRH45516 | Soybean | nucleus | 41.07 | 38.21 |
| KRG99513 | Soybean | nucleus | 37.33 | 37.94 |
| Solyc03g082840.2.1 | Tomato | nucleus | 19.47 | 28.29 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 24.27 | 26.92 |
| Solyc10g009360.2.1 | Tomato | nucleus | 18.13 | 26.05 |
| Solyc06g075370.2.1 | Tomato | nucleus | 20.8 | 25.74 |
| Solyc02g090310.1.1 | Tomato | nucleus | 17.6 | 25.38 |
| Solyc06g076030.2.1 | Tomato | nucleus | 21.87 | 24.55 |
| Solyc05g054510.1.1 | Tomato | nucleus | 18.93 | 23.83 |
| Solyc08g082910.1.1 | Tomato | nucleus | 20.0 | 23.58 |
| Solyc01g096120.2.1 | Tomato | nucleus | 17.07 | 23.19 |
| Solyc10g086440.1.1 | Tomato | nucleus | 21.87 | 22.65 |
| Solyc04g070960.1.1 | Tomato | nucleus | 16.0 | 22.47 |
| Solyc11g066050.1.1 | Tomato | nucleus | 18.93 | 22.26 |
| Solyc11g072500.1.1 | Tomato | nucleus | 16.8 | 22.11 |
| Solyc06g071480.2.1 | Tomato | nucleus | 16.27 | 21.86 |
| Solyc02g078620.1.1 | Tomato | nucleus | 16.27 | 21.48 |
| Solyc09g010680.2.1 | Tomato | nucleus | 22.67 | 21.36 |
| Solyc02g077950.1.1 | Tomato | nucleus | 20.53 | 20.32 |
| Solyc03g112930.2.1 | Tomato | nucleus | 17.33 | 19.52 |
| Solyc02g077960.1.1 | Tomato | nucleus | 15.47 | 19.4 |
| Solyc06g005130.2.1 | Tomato | nucleus | 15.47 | 18.83 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:K4D5Q2 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF62 | EnsemblPlantsGene:Solyc11g010940.1 |
| EnsemblPlants:Solyc11g010940.1.1 | UniParc:UPI000276990B | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chr11:-:3987715..3989539
Molecular Weight (calculated)
40928.7 Da
IEP (calculated)
7.032
GRAVY (calculated)
-0.885
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSQDNKGES QSSGGGDDGG GGPMGARPKE QALNCPRCDS PNTKFCYYNN YSLSQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKKMKT SSSSTRFSGD
101: SKDTISGSSD IGGLKFFHGL SPAMDFQLGG LNFPRLSNNS STSTVGGNIF NQFSSFGENS TPNIGSTSCF SLDPSGSSSL LGFNNNFPFS SSMLKQGNEG
201: VQEMGSMGVH HGTMASSIES LSSINQDLHW KLQQQRLSML FGGENQKENI ISSSIPLHDD QNQNQNQIQI QKPQPILFQN LEISSSKQQE DHQETFGNNN
301: VDSRKDCSTT IGNHHGNNLS TEWFFDNSFG LNSNSTHSNN NNNNGNGNAN DDQNVNNWNS TIQAWSNLNQ YSTLP
101: SKDTISGSSD IGGLKFFHGL SPAMDFQLGG LNFPRLSNNS STSTVGGNIF NQFSSFGENS TPNIGSTSCF SLDPSGSSSL LGFNNNFPFS SSMLKQGNEG
201: VQEMGSMGVH HGTMASSIES LSSINQDLHW KLQQQRLSML FGGENQKENI ISSSIPLHDD QNQNQNQIQI QKPQPILFQN LEISSSKQQE DHQETFGNNN
301: VDSRKDCSTT IGNHHGNNLS TEWFFDNSFG LNSNSTHSNN NNNNGNGNAN DDQNVNNWNS TIQAWSNLNQ YSTLP
001: MSSHTNLPSP KPVPKPDHRI SGTSQTKKPP SSSVAQDQQN LKCPRCNSPN TKFCYYNNYS LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPN
101: SSMNTLPSSS SSQRFFSSIM EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMMSSGRENT PVDVGSGLSL MGFGDFNNNH SPTGFTTAGA
201: SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV VVERPQPILY RNLEIVNSSS PSSPTKKGDN QTEWYFGNNS DNEGVISNNA NTGGGGSEWN
301: NGIQAWTDLN HYNALP
101: SSMNTLPSSS SSQRFFSSIM EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMMSSGRENT PVDVGSGLSL MGFGDFNNNH SPTGFTTAGA
201: SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV VVERPQPILY RNLEIVNSSS PSSPTKKGDN QTEWYFGNNS DNEGVISNNA NTGGGGSEWN
301: NGIQAWTDLN HYNALP
Arabidopsis Description
DOF5.7SCAP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.