Factsheet for Solyc11g066050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001174	Potato	nucleus	74.92	93.36
GSMUA_Achr7P15150_001	Banana	nucleus	24.45	43.09
Solyc06g076030.2.1	Tomato	nucleus	31.03	29.64
GSMUA_Achr5P07150_001	Banana	nucleus	29.47	28.48
Solyc05g054510.1.1	Tomato	nucleus	25.39	27.18
KRH70477	Soybean	nucleus	31.03	26.68
KRG99864	Soybean	nucleus	30.09	26.45
KRH46814	Soybean	nucleus	30.41	26.43
Solyc10g086440.1.1	Tomato	nucleus	28.84	25.41
Solyc09g010680.2.1	Tomato	nucleus	30.72	24.62
Solyc06g075370.2.1	Tomato	nucleus	21.0	22.11
Solyc03g082840.2.1	Tomato	nucleus	17.55	21.71
Solyc02g090310.1.1	Tomato	nucleus	16.93	20.77
Solyc11g072500.1.1	Tomato	nucleus	18.18	20.35
Solyc02g078620.1.1	Tomato	nucleus	17.87	20.07
Solyc06g071480.2.1	Tomato	nucleus	17.24	19.71
Solyc01g096120.2.1	Tomato	nucleus	16.93	19.57
Solyc10g009360.2.1	Tomato	nucleus	15.99	19.54
Solyc04g070960.1.1	Tomato	nucleus	16.3	19.48
Solyc11g010940.1.1	Tomato	nucleus	22.26	18.93
Solyc02g077960.1.1	Tomato	nucleus	17.55	18.73
Solyc08g082910.1.1	Tomato	nucleus	18.18	18.24
Solyc03g112930.2.1	Tomato	nucleus	18.5	17.72
Solyc02g077950.1.1	Tomato	nucleus	20.06	16.89
Solyc06g005130.2.1	Tomato	nucleus	16.3	16.88

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4D9L4	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	EnsemblPlantsGene:Solyc11g066050.1
EnsemblPlants:Solyc11g066050.1.1	UniParc:UPI0002769CA2	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:51726223..51727371

Molecular Weight (calculated)

34630.3 Da

IEP (calculated)

9.070

GRAVY (calculated)

-0.699

Length

319 amino acids

Sequence
(BLAST)

001: MAFSSFPIYL DHPNLHHLQQ QPDHHQQGNP GLDNPQLLPP PTQVGGGPGS IRPGSMVNRA RIAKLPLPEA GLKCPRCDSS NTKFCYFNNY SLSQPRHFCK
101: NCRRYWTRGG ALRNVPVGGG CRRNKRNKSS SNNNSAKSGG GGGLMGNSNN ASTSGIPSIN CSMEMIGHHF SQSSTQFTSL MGAFQNLNNY GGGLIQPPTH
201: QLVGEMGFQI GSNNLLPSLV ASNNFEHPTN LYPNFQNEGT TTTTTTTIEA SNGVTQQVKM EDNNRQGMNS STKQFLGTLE NNNQYWDVAN ANANANVNSW
301: IGFSSDLNNN SLSTTNHLL

Best Arabidopsis Sequence Match ( AT3G55370.2 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.