Factsheet for Solyc10g086440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049288	Potato	nucleus	94.48	91.44
VIT_08s0007g00180.t01	Wine grape	nucleus	51.38	53.91
CDY07781	Canola	nucleus	30.11	50.93
Solyc09g010680.2.1	Tomato	nucleus	50.83	46.23
GSMUA_Achr6P33410_001	Banana	nucleus	29.01	42.51
Bra000008.1-P	Field mustard	nucleus	33.98	41.98
CDY65260	Canola	nucleus	35.08	41.1
CDX93365	Canola	nucleus	35.08	41.1
Zm00001d034653_P001	Maize	nucleus	25.41	41.07
CDX79743	Canola	nucleus	33.15	40.96
CDX74947	Canola	nucleus	36.74	40.92
Bra017171.1-P	Field mustard	nucleus	34.81	40.78
CDX91370	Canola	nucleus	36.46	40.62
Bra005181.1-P	Field mustard	nucleus	36.46	40.62
AT2G37590.1	Thale cress	nucleus	36.46	40.0
Solyc06g076030.2.1	Tomato	nucleus	35.64	38.62
Solyc05g054510.1.1	Tomato	nucleus	31.77	38.59
Zm00001d034651_P002	Maize	nucleus	42.54	37.29
Os03t0821200-00	Rice	nucleus	42.27	36.96
KXG37254	Sorghum	nucleus	43.92	36.55
TraesCS5B01G492600.1	Wheat	nucleus	40.61	32.52
TraesCS5A01G479400.1	Wheat	nucleus	41.44	32.12
TraesCS5D01G493000.1	Wheat	nucleus	40.06	31.87
HORVU5Hr1G113220.6	Barley	nucleus	39.5	31.78
HORVU5Hr1G113190.2	Barley	nucleus, plastid	24.86	31.47
Solyc11g066050.1.1	Tomato	nucleus	25.41	28.84
Solyc03g082840.2.1	Tomato	nucleus	19.61	27.52
Solyc06g071480.2.1	Tomato	nucleus	19.89	25.81
Solyc06g075370.2.1	Tomato	nucleus	21.27	25.41
Zm00001d012963_P001	Maize	plastid, vacuole	41.71	24.04
Solyc02g090310.1.1	Tomato	nucleus	17.13	23.85
Solyc02g078620.1.1	Tomato	nucleus	18.23	23.24
Solyc04g070960.1.1	Tomato	nucleus	17.13	23.22
Solyc11g072500.1.1	Tomato	nucleus	18.23	23.16
Solyc08g082910.1.1	Tomato	nucleus	19.61	22.33
Solyc10g009360.2.1	Tomato	nucleus	16.02	22.22
Solyc03g112930.2.1	Tomato	nucleus	20.44	22.22
Solyc11g010940.1.1	Tomato	nucleus	22.65	21.87
Solyc02g077960.1.1	Tomato	nucleus	17.4	21.07
Solyc01g096120.2.1	Tomato	nucleus	16.02	21.01
Solyc06g005130.2.1	Tomato	nucleus	17.13	20.13
Solyc02g077950.1.1	Tomato	nucleus	18.78	17.94
HORVU2Hr1G095390.1	Barley	cytosol, mitochondrion, nucleus	5.52	9.05

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	InterPro:IPR003851
UniProt:K4D476	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992
PANTHER:PTHR31992:SF66	SUPFAM:SSF101447	EnsemblPlantsGene:Solyc10g086440.1	EnsemblPlants:Solyc10g086440.1.1	UniParc:UPI00027694CE	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:65262346..65263624

Molecular Weight (calculated)

38948.4 Da

IEP (calculated)

9.543

GRAVY (calculated)

-0.667

Length

362 amino acids

Sequence
(BLAST)

001: MVFSSISAYL DPSNWQQQVG YSIPNPQLPS GLSQPTPPRP LASTPPPPPP PPPPPQPHHV GGGGSIRPGS MADRARLANI PMSEATQKCP RCESTNTKFC
101: YFNNYSLSQP RHFCKTCRRY WTRGGALRSV PVGGGCRRNK RSSTSNSSTS AKSSNNNTKS QGSSQTTNSG STSNNNSSPS SAASLLGLMN PPIHPLRFMS
201: PLGPLTDQHF TPNEMNYTSI SSPSPAPIVM GTNENMNFQL GMGSNLEQWR LHQQLVNQFP YNLYGGLDSS PASGSGSASA SGLYPFHQAH YDASGGGVIS
301: QIRPKVSNPM LTQLALMKME DDQDHVASMP RQFLGNENWT SNANWNELSA SFSSSSTSNN VL

Best Arabidopsis Sequence Match ( AT2G37590.1 )
(BLAST)

001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR

Arabidopsis Description

DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.