Factsheet for HORVU5Hr1G113190.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07781	Canola	nucleus	27.62	36.92
GSMUA_Achr6P33410_001	Banana	nucleus	29.72	34.41
Bra000008.1-P	Field mustard	nucleus	31.12	30.38
CDX79743	Canola	nucleus	30.77	30.03
AT2G37590.1	Thale cress	nucleus	33.92	29.39
VIT_08s0007g00180.t01	Wine grape	nucleus	35.31	29.28
Bra005181.1-P	Field mustard	nucleus	32.52	28.62
CDX74947	Canola	nucleus	32.52	28.62
CDX91370	Canola	nucleus	32.52	28.62
Zm00001d034651_P002	Maize	nucleus	40.91	28.33
CDX93365	Canola	nucleus	30.42	28.16
CDY65260	Canola	nucleus	30.42	28.16
Bra017171.1-P	Field mustard	nucleus	30.07	27.83
HORVU5Hr1G113220.6	Barley	nucleus	43.01	27.33
Solyc10g086440.1.1	Tomato	nucleus	31.47	24.86
HORVU5Hr1G021290.1	Barley	nucleus	29.02	24.06
PGSC0003DMT400049288	Potato	nucleus	31.12	23.8
HORVU3Hr1G116260.1	Barley	nucleus	25.17	22.86
HORVU1Hr1G005390.2	Barley	nucleus	29.02	22.74
HORVU3Hr1G116270.2	Barley	nucleus	27.62	22.7
HORVU3Hr1G116220.1	Barley	nucleus, plastid	31.12	22.42
HORVU5Hr1G097600.1	Barley	nucleus, plastid	16.08	19.83
HORVU2Hr1G013060.1	Barley	nucleus, plastid	19.23	18.46
HORVU3Hr1G083460.1	Barley	nucleus	20.28	17.52
HORVU1Hr1G074140.1	Barley	nucleus, vacuole	20.98	17.44
HORVU7Hr1G043250.2	Barley	nucleus	16.08	16.2
HORVU5Hr1G048700.1	Barley	nucleus	18.53	15.92
HORVU5Hr1G097620.1	Barley	nucleus	20.28	15.03
HORVU6Hr1G065250.3	Barley	nucleus	22.38	13.62
HORVU2Hr1G095390.1	Barley	cytosol, mitochondrion, nucleus	3.5	4.52
HORVU2Hr1G047750.4	Barley	plastid	2.8	3.54

Protein Annotations

EnsemblPlants:HORVU5Hr1G113190.2	EnsemblPlantsGene:HORVU5Hr1G113190	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chrchr5H:+:641204053..641205060

Molecular Weight (calculated)

21821.0 Da

IEP (calculated)

9.640

GRAVY (calculated)

-0.125

Length

286 amino acids

Sequence
(BLAST)

001: MGSAVALSGA GGGGGGGAGG GPTGGAVVRP GSMTDRARMA KIPQPEPGLK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR RYWTRGGTLR NVPXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TAGGGNGNGS SAAAAAGVMM SSQGQGHGQM PFFGSLHPLG AGNGDHYGTG ASRLGFPGLD PVDYQLGAGG
201: AAAAAMGLEP XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXTHTHSLS LTTVRVCVSL FSCRCLRESG FSSAFAKPNA VHPLLV

Best Arabidopsis Sequence Match ( AT2G37590.1 )
(BLAST)

001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR

Arabidopsis Description

DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.