Factsheet for Bra000008.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07781	Canola	nucleus	71.67	98.13
CDX79743	Canola	nucleus	94.2	94.2
Bra005181.1-P	Field mustard	nucleus	91.47	82.46
Bra017171.1-P	Field mustard	nucleus	81.23	77.02
AT2G37590.1	Thale cress	nucleus	85.67	76.06
Bra009587.1-P	Field mustard	nucleus	28.67	47.46
VIT_08s0007g00180.t01	Wine grape	nucleus	47.1	40.0
Zm00001d034653_P001	Maize	nucleus	29.69	38.84
Solyc10g086440.1.1	Tomato	nucleus	41.98	33.98
PGSC0003DMT400049288	Potato	nucleus	42.32	33.16
Bra005725.1-P	Field mustard	nucleus	45.39	33.0
Bra028872.1-P	Field mustard	nucleus	45.39	32.76
HORVU5Hr1G113190.2	Barley	nucleus, plastid	30.38	31.12
Bra014752.1-P	Field mustard	nucleus	36.86	30.86
Zm00001d034651_P002	Maize	nucleus	43.34	30.75
Bra007156.1-P	Field mustard	nucleus	34.13	30.58
Bra030696.1-P	Field mustard	nucleus	34.81	30.54
Os03t0821200-00	Rice	nucleus	42.32	29.95
KXG37254	Sorghum	nucleus	43.69	29.43
Bra031588.1-P	Field mustard	nucleus	31.4	29.02
HORVU5Hr1G113220.6	Barley	nucleus	42.66	27.78
Bra035667.1-P	Field mustard	nucleus	32.08	27.33
TraesCS5B01G492600.1	Wheat	nucleus	41.98	27.21
TraesCS5D01G493000.1	Wheat	nucleus	41.64	26.81
TraesCS5A01G479400.1	Wheat	nucleus	42.32	26.55
Bra012804.1-P	Field mustard	nucleus	20.48	24.9
Bra020261.1-P	Field mustard	nucleus	19.45	23.95
Bra035696.1-P	Field mustard	nucleus	20.82	23.83
Bra002504.1-P	Field mustard	nucleus	20.48	23.26
Bra006923.1-P	Field mustard	nucleus	19.11	23.14
Bra030089.1-P	Field mustard	nucleus	22.87	22.48
Bra035956.1-P	Field mustard	nucleus	20.48	22.47
Bra032891.1-P	Field mustard	nucleus	22.53	22.22
Bra017906.1-P	Field mustard	nucleus	19.11	22.13
Bra013003.1-P	Field mustard	nucleus	22.18	22.11
Bra029352.1-P	Field mustard	nucleus	20.82	21.94
Bra010884.1-P	Field mustard	nucleus	21.84	21.69
Bra035873.1-P	Field mustard	nucleus	24.91	21.47
Bra031853.1-P	Field mustard	nucleus	21.84	21.05
Bra037822.1-P	Field mustard	nucleus	20.14	20.77
Bra019247.1-P	Field mustard	nucleus	24.23	20.7
Bra014418.1-P	Field mustard	nucleus	21.5	20.32
Bra012277.1-P	Field mustard	nucleus	18.09	20.31
Bra013758.1-P	Field mustard	nucleus	23.21	20.24
Bra009588.1-P	Field mustard	plastid	12.29	20.22
Bra006675.1-P	Field mustard	nucleus	19.11	20.22
Bra027722.1-P	Field mustard	nucleus	22.18	20.06
Bra024399.1-P	Field mustard	nucleus	20.82	19.93
Bra037401.1-P	Field mustard	nucleus	20.14	19.8
Bra010548.1-P	Field mustard	nucleus	23.55	19.6
Bra010136.1-P	Field mustard	nucleus	24.57	19.57
Zm00001d012963_P001	Maize	plastid, vacuole	41.64	19.43
Bra004525.1-P	Field mustard	nucleus	22.18	18.47
Bra000429.1-P	Field mustard	nucleus	23.21	18.43
Bra039272.1-P	Field mustard	nucleus, plastid	21.84	17.78
HORVU2Hr1G095390.1	Barley	cytosol, mitochondrion, nucleus	4.78	6.33

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra000008	EnsemblPlants:Bra000008.1	EnsemblPlants:Bra000008.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4C730	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI0002540005	InterPro:Znf_Dof	SEG:seg	:

Description

AT2G37590 (E=3e-076) ATDOF2.4, DOF2.4 | Dof-type zinc finger domain-containing protein

Coordinates

chrA03:+:8809308..8810496

Molecular Weight (calculated)

31350.9 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.606

Length

293 amino acids

Sequence
(BLAST)

001: MVFSSIQAYL DSSNWQQAPP SNHNQGGAGA SDTGGHGLFT QPQSNGSGGS GSIRPGSMVD RARQANVAMP EAALKCPRCE STNTKFCYFN NYSLTQPRHF
101: CKSCRRYWTR GGSLRNVPVG GGYRRNRHTK SSSNNNNSTA TSNNTSFTWA ASGNASTISA ILSSNYGGNH ESILSQILYP GRVMNPNYNH HLGDLLDNTK
201: TDSNMSLLNY GGLSQDLRSV HMGASGGSLM SCADPSSNGF YPFESPRITS ASISSALASQ FSSVKGEDNP YKWVNVNGNC SSWIDLSTFG SSS

Best Arabidopsis Sequence Match ( AT2G37590.1 )
(BLAST)

001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR

Arabidopsis Description

DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.