Factsheet for Bra019247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71684	Canola	nucleus	97.67	100.0
CDX92613	Canola	nucleus	99.13	99.13
CDY71763	Canola	nucleus	98.54	98.54
Bra013758.1-P	Field mustard	nucleus	85.13	86.9
AT4G24060.1	Thale cress	nucleus	85.42	85.67
Bra010548.1-P	Field mustard	nucleus	86.01	83.81
KRG92523	Soybean	nucleus	44.31	50.33
GSMUA_Achr4P30470_001	Banana	nucleus	21.87	46.58
KRH34272	Soybean	nucleus	43.44	44.35
Bra027722.1-P	Field mustard	nucleus	39.94	42.28
Solyc03g082840.2.1	Tomato	nucleus	31.78	42.25
PGSC0003DMT400047705	Potato	nucleus	31.49	41.38
VIT_15s0046g00150.t01	Wine grape	nucleus	36.15	39.24
GSMUA_Achr11P...	Banana	nucleus	32.65	38.1
Bra014418.1-P	Field mustard	nucleus	32.07	35.48
Bra000429.1-P	Field mustard	nucleus	37.9	35.23
Bra004525.1-P	Field mustard	nucleus	35.57	34.66
Bra039272.1-P	Field mustard	nucleus, plastid	36.15	34.44
Bra037401.1-P	Field mustard	nucleus	27.11	31.21
GSMUA_Achr1P03930_001	Banana	nucleus	22.16	29.57
Bra009587.1-P	Field mustard	nucleus	14.87	28.81
Bra035956.1-P	Field mustard	nucleus	20.12	25.84
Bra012804.1-P	Field mustard	nucleus	18.08	25.73
Bra020261.1-P	Field mustard	nucleus	17.78	25.63
Bra002504.1-P	Field mustard	nucleus	19.24	25.58
Bra013003.1-P	Field mustard	nucleus	21.87	25.51
Bra017906.1-P	Field mustard	nucleus	18.66	25.3
Bra006923.1-P	Field mustard	nucleus	17.78	25.21
Bra012277.1-P	Field mustard	nucleus	18.95	24.9
Bra035696.1-P	Field mustard	nucleus	18.37	24.61
Bra029352.1-P	Field mustard	nucleus	19.83	24.46
Bra010136.1-P	Field mustard	nucleus	26.24	24.46
Bra035873.1-P	Field mustard	nucleus	24.2	24.41
Bra000008.1-P	Field mustard	nucleus	20.7	24.23
Bra017171.1-P	Field mustard	nucleus	21.57	23.95
Bra006675.1-P	Field mustard	nucleus	19.24	23.83
Bra005181.1-P	Field mustard	nucleus	22.45	23.69
Bra007156.1-P	Field mustard	nucleus	22.16	23.24
Bra014752.1-P	Field mustard	nucleus	23.03	22.57
Bra030696.1-P	Field mustard	nucleus	20.12	20.66
Bra035667.1-P	Field mustard	nucleus	20.41	20.35
Bra032891.1-P	Field mustard	nucleus	17.49	20.2
Bra010884.1-P	Field mustard	nucleus	17.2	20.0
Bra030089.1-P	Field mustard	nucleus	16.62	19.13
Bra031853.1-P	Field mustard	nucleus	16.62	18.75
Bra031588.1-P	Field mustard	nucleus	17.2	18.61
Bra037822.1-P	Field mustard	nucleus	15.16	18.31
Bra024399.1-P	Field mustard	nucleus	16.04	17.97
Bra005725.1-P	Field mustard	nucleus	20.99	17.87
Bra028872.1-P	Field mustard	nucleus	20.99	17.73
Bra009588.1-P	Field mustard	plastid	4.37	8.43

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra019247	EnsemblPlants:Bra019247.1	EnsemblPlants:Bra019247.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4DRV4	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF78	UniParc:UPI0002540F71	InterPro:Znf_Dof	SEG:seg	:

Description

AT4G24060 (E=3e-121) | Dof-type zinc finger domain-containing protein

Coordinates

chrA03:+:25483269..25484696

Molecular Weight (calculated)

37274.9 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.833

Length

343 amino acids

Sequence
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPSQ PQEPTPDGAA GGVERKARPE KDQAINCPRC NSTNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV
101: GGGSRKNKRS HSSSISSSDI GNNHSVSTQP ATKKHRSDQH HHHLMSMSQQ GLTGQNPKFL ETTQQDLNLG FPPPHGLIRT NFTDLIHNIG NNNKSTNNLL
201: LSSSCSATSA MATSPLDFIR NNNSNNGNSS FMGFPVHNQD PTSGGFSMQD HYKPCNSNTT LLGFSLDHHR NNDFPGGFQG GEGGDDVNGR PLFPFEDLKL
301: PVSSSSATSN VDINDHQKQA SGGDAAATSG GYWTGMLSGG SWC

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.