Factsheet for Bra028872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04855	Canola	nucleus	99.51	99.51
Bra005725.1-P	Field mustard	nucleus	88.42	89.08
AT5G02460.1	Thale cress	nucleus	86.21	87.72
Bra009587.1-P	Field mustard	nucleus	36.7	84.18
Bra009588.1-P	Field mustard	plastid	34.48	78.65
Bra000008.1-P	Field mustard	nucleus	32.76	45.39
Bra005181.1-P	Field mustard	nucleus	35.22	44.0
KRH46814	Soybean	nucleus	39.41	43.6
KRG99864	Soybean	nucleus	38.92	43.53
Bra017171.1-P	Field mustard	nucleus	32.27	42.39
Solyc09g010680.2.1	Tomato	nucleus	38.92	39.7
Bra014752.1-P	Field mustard	nucleus	33.99	39.43
PGSC0003DMT400023033	Potato	nucleus	38.92	39.21
Bra007156.1-P	Field mustard	nucleus	30.79	38.23
Bra030696.1-P	Field mustard	nucleus	30.79	37.43
KRH70477	Soybean	nucleus	33.0	36.12
Os05t0112200-01	Rice	nucleus	25.37	35.52
Os07t0236700-01	Rice	nucleus	30.05	34.56
Bra035667.1-P	Field mustard	nucleus	28.82	34.01
Bra031588.1-P	Field mustard	nucleus	26.35	33.75
TraesCS4B01G206800.1	Wheat	nucleus	30.79	33.07
TraesCS4D01G207600.1	Wheat	nucleus	30.79	32.81
TraesCS4A01G097800.1	Wheat	nucleus	30.79	32.64
Zm00001d035651_P001	Maize	nucleus	27.34	30.41
HORVU1Hr1G005390.2	Barley	nucleus	27.09	30.14
Zm00001d011058_P001	Maize	nucleus	24.88	29.88
KXG21095	Sorghum	nucleus	28.33	29.87
HORVU3Hr1G116260.1	Barley	nucleus	21.92	28.25
HORVU3Hr1G116220.1	Barley	nucleus, plastid	27.59	28.21
Bra035956.1-P	Field mustard	nucleus	17.73	26.97
Bra012804.1-P	Field mustard	nucleus	15.02	25.31
Bra013003.1-P	Field mustard	nucleus	18.23	25.17
HORVU3Hr1G116270.2	Barley	nucleus	21.43	25.0
Bra006923.1-P	Field mustard	nucleus	14.53	24.38
Bra020261.1-P	Field mustard	nucleus	14.29	24.37
Bra032891.1-P	Field mustard	nucleus	17.49	23.91
Bra002504.1-P	Field mustard	nucleus	15.02	23.64
Bra037822.1-P	Field mustard	nucleus	16.26	23.24
Bra029352.1-P	Field mustard	nucleus	15.76	23.02
Bra024399.1-P	Field mustard	nucleus	17.24	22.88
Bra030089.1-P	Field mustard	nucleus	16.75	22.82
Bra035696.1-P	Field mustard	nucleus	14.29	22.66
Bra031853.1-P	Field mustard	nucleus	16.26	21.71
Bra010884.1-P	Field mustard	nucleus	15.76	21.69
Bra006675.1-P	Field mustard	nucleus	14.78	21.66
Bra004525.1-P	Field mustard	nucleus	18.72	21.59
Bra037401.1-P	Field mustard	nucleus	15.52	21.14
Bra019247.1-P	Field mustard	nucleus	17.73	20.99
Bra014418.1-P	Field mustard	nucleus	16.01	20.97
Bra017906.1-P	Field mustard	nucleus	13.05	20.95
Bra010548.1-P	Field mustard	nucleus	17.98	20.74
Bra012277.1-P	Field mustard	nucleus	13.3	20.69
Bra013758.1-P	Field mustard	nucleus	17.0	20.54
Bra000429.1-P	Field mustard	nucleus	17.98	19.78
Bra039272.1-P	Field mustard	nucleus, plastid	17.49	19.72
Bra027722.1-P	Field mustard	nucleus	15.52	19.44
Bra035873.1-P	Field mustard	nucleus	16.01	19.12
Bra010136.1-P	Field mustard	nucleus	16.01	17.66

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra028872	EnsemblPlants:Bra028872.1	EnsemblPlants:Bra028872.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4EJA6	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI0002543696	InterPro:Znf_Dof	SEG:seg	:

Description

AT5G02460 (E=3e-123) | Dof-type zinc finger domain-containing protein

Coordinates

chrA02:-:1671958..1673391

Molecular Weight (calculated)

42846.3 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.645

Length

406 amino acids

Sequence
(BLAST)

001: MVFSSFPTYP DSSNWQQQHQ PITTTVGFTG NNNISQQFLP HHPLPPQPQQ TPPPLQHNGN GGGGGGPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC
101: DSTNTKFCYF NNYNLTQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSGGGGASS SSGNSKSQDS TTSNDQYHHR AMANNQMGPP TSTSLSSLLS
201: SYNAGLIPGH DHNNNNNNIL GLGSSLSPLK LMHPSDFTDN FTLQYGAVSA PSYHTGGGSS GGSGGGGASA ILTGLDQWRF PATHHQLPLL GSLDNSSSSG
301: LYPFDHQNPG YGLVTGSGQY RPKNIFHNLV SSSSSASSAM VTATASQLAS VKMEDSNNQL NMSRQLFGNE QELWNIHGSA ASTAAASTNS WSDVSNNFSS
401: SSTSNI

Best Arabidopsis Sequence Match ( AT5G02460.1 )
(BLAST)

001: MVFSSFPTYP DHSSNWQQQH QPITTTVGFT GNNINQQFLP HHPLPPQQQQ TPPQLHHNNG NGGVAVPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC
101: DSTNTKFCYF NNYSLTQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSSGGGGGS TSSGNSKSQD SATSNDQYHH RAMANNQMGP PSSSSSLSSL
201: LSSYNAGLIP GHDHNSNNNN ILGLGSSLPP LKLMPPLDFT DNFTLQYGAV SAPSYHIGGG SSGGAAALLN GFDQWRFPAT NQLPLGGLDP FDQQHQMEQQ
301: NPGYGLVTGS GQYRPKNIFH NLISSSSSAS SAMVTATASQ LASVKMEDSN NQLNLSRQLF GDEQQLWNIH GAAAASTAAA TSSWSEVSNN FSSSSTSNI

Arabidopsis Description

DOF5.1Dof zinc finger protein DOF5.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.