Factsheet for Bra013758.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72657	Canola	nucleus	86.31	99.32
CDY03494	Canola	nucleus	95.24	93.02
Bra019247.1-P	Field mustard	nucleus	86.9	85.13
AT4G24060.1	Thale cress	nucleus	84.52	83.04
Bra010548.1-P	Field mustard	nucleus	84.52	80.68
KRG92523	Soybean	nucleus	42.56	47.35
KRH34272	Soybean	nucleus	44.35	44.35
GSMUA_Achr4P30470_001	Banana	nucleus	20.24	42.24
Bra027722.1-P	Field mustard	nucleus	38.99	40.43
Solyc03g082840.2.1	Tomato	nucleus	30.65	39.92
PGSC0003DMT400047705	Potato	nucleus	30.36	39.08
VIT_15s0046g00150.t01	Wine grape	nucleus	35.42	37.66
GSMUA_Achr11P...	Banana	nucleus	32.14	36.73
Bra004525.1-P	Field mustard	nucleus	36.9	35.23
Bra014418.1-P	Field mustard	nucleus	32.44	35.16
Bra039272.1-P	Field mustard	nucleus, plastid	37.2	34.72
Bra000429.1-P	Field mustard	nucleus	37.5	34.15
Bra037401.1-P	Field mustard	nucleus	26.49	29.87
GSMUA_Achr1P03930_001	Banana	nucleus	22.02	28.79
Bra009587.1-P	Field mustard	nucleus	14.58	27.68
Bra035956.1-P	Field mustard	nucleus	20.83	26.22
Bra017906.1-P	Field mustard	nucleus	19.64	26.09
Bra012277.1-P	Field mustard	nucleus	20.24	26.05
Bra013003.1-P	Field mustard	nucleus	22.62	25.85
Bra020261.1-P	Field mustard	nucleus	18.15	25.63
Bra029352.1-P	Field mustard	nucleus	21.13	25.54
Bra012804.1-P	Field mustard	nucleus	18.15	25.31
Bra035696.1-P	Field mustard	nucleus	18.45	24.22
Bra010136.1-P	Field mustard	nucleus	26.49	24.18
Bra002504.1-P	Field mustard	nucleus	18.45	24.03
Bra006923.1-P	Field mustard	nucleus	17.26	23.97
Bra035873.1-P	Field mustard	nucleus	24.11	23.82
Bra007156.1-P	Field mustard	nucleus	22.62	23.24
Bra000008.1-P	Field mustard	nucleus	20.24	23.21
Bra006675.1-P	Field mustard	nucleus	19.05	23.1
Bra017171.1-P	Field mustard	nucleus	20.83	22.65
Bra005181.1-P	Field mustard	nucleus	21.73	22.46
Bra014752.1-P	Field mustard	nucleus	23.21	22.29
Bra030696.1-P	Field mustard	nucleus	21.73	21.86
Bra035667.1-P	Field mustard	nucleus	20.54	20.06
Bra010884.1-P	Field mustard	nucleus	17.56	20.0
Bra031853.1-P	Field mustard	nucleus	17.56	19.41
Bra032891.1-P	Field mustard	nucleus	16.96	19.19
Bra030089.1-P	Field mustard	nucleus	16.96	19.13
Bra037822.1-P	Field mustard	nucleus	16.07	19.01
Bra031588.1-P	Field mustard	nucleus	17.86	18.93
Bra024399.1-P	Field mustard	nucleus	16.96	18.63
Bra005725.1-P	Field mustard	nucleus	20.83	17.37
Bra028872.1-P	Field mustard	nucleus	20.54	17.0
Bra009588.1-P	Field mustard	plastid	4.17	7.87

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra013758	EnsemblPlants:Bra013758.1	EnsemblPlants:Bra013758.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4DB98	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF78	UniParc:UPI00025460AA	InterPro:Znf_Dof	SEG:seg	:

Description

AT4G24060 (E=8e-112) | Dof-type zinc finger domain-containing protein

Coordinates

chrA01:+:7625655..7626665

Molecular Weight (calculated)

36292.6 Da

IEP (calculated)

8.244

GRAVY (calculated)

-0.809

Length

336 amino acids

Sequence
(BLAST)

001: MVVKPLEEIV TNTCPKPQSA QTQQPSSVGA GGGAERKARP EKDQAVNCPR CNSINTKFCY YNNYSLTQPR FFCKGCRRYW TEGGSLRNIP VGGGSRKNKR
101: SHSSSVSSSS DINKNHSDST QPATKKHHSD HHHLMSMSQQ GLTGQNPKFF ETTQQDLNLG FPPHGLIRTN FTDLVHNIGN NNKSTNNPLL SSSSSTTSAM
201: AVSSLDLIRN NTSNNGSSSF MGFPFHNQDP TSGGFSMQDH YKPCNSNTTL LGFSLDHHHN NGFHGGFQEG EGGGEAGDDV NGRHLFPFED LKVPVSSSSA
301: TINVDINDNQ KRASGGDASA NSGGYWTGML SGGSWC

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.