Factsheet for Bra035956.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16836	Canola	nucleus	100.0	100.0
CDX87189	Canola	nucleus	85.39	91.2
Bra013003.1-P	Field mustard	nucleus	78.65	71.43
Bra029352.1-P	Field mustard	nucleus	70.79	67.99
AT5G60850.1	Thale cress	nucleus	76.03	66.12
KRH56758	Soybean	nucleus	45.69	41.78
KRH03180	Soybean	nucleus	46.82	41.67
VIT_17s0000g04850.t01	Wine grape	nucleus	46.44	38.99
PGSC0003DMT400010397	Potato	nucleus	44.94	37.62
KRH54755	Soybean	nucleus	41.2	36.3
KRH63162	Soybean	nucleus	42.32	33.14
Bra009587.1-P	Field mustard	nucleus	20.6	31.07
GSMUA_Achr5P23930_001	Banana	nucleus	21.72	29.74
Zm00001d051700_P001	Maize	mitochondrion	25.09	26.48
Os02t0726300-01	Rice	nucleus	26.22	24.82
Bra020261.1-P	Field mustard	nucleus	22.1	24.79
GSMUA_Achr3P10670_001	Banana	nucleus	21.35	24.05
TraesCS6D01G268400.1	Wheat	nucleus	25.84	23.79
TraesCS6B01G317100.1	Wheat	nucleus	25.47	23.53
TraesCS6A01G287700.1	Wheat	nucleus	25.47	23.37
Bra002504.1-P	Field mustard	nucleus	22.47	23.26
HORVU7Hr1G043250.2	Barley	nucleus	24.72	23.24
TraesCS7D01G215300.1	Wheat	nucleus	24.72	23.24
Zm00001d017900_P001	Maize	nucleus	25.84	23.0
Bra017906.1-P	Field mustard	nucleus	21.72	22.92
Bra006923.1-P	Field mustard	nucleus	20.6	22.73
TraesCS7A01G213400.1	Wheat	nucleus	23.97	22.54
Bra037822.1-P	Field mustard	nucleus	23.97	22.54
Bra012804.1-P	Field mustard	nucleus	20.22	22.41
Bra035696.1-P	Field mustard	nucleus	21.35	22.27
Os06t0284500-00	Rice	nucleus	23.97	22.15
GSMUA_AchrUn_...	Banana	nucleus	22.47	21.51
Bra037401.1-P	Field mustard	nucleus	23.97	21.48
KXG30845	Sorghum	nucleus	24.34	21.38
Bra006675.1-P	Field mustard	nucleus	22.1	21.3
Bra012277.1-P	Field mustard	nucleus	20.6	21.07
Bra014752.1-P	Field mustard	nucleus	27.34	20.86
Bra013758.1-P	Field mustard	nucleus	26.22	20.83
Bra007156.1-P	Field mustard	nucleus	25.09	20.49
Bra000008.1-P	Field mustard	nucleus	22.47	20.48
Bra030089.1-P	Field mustard	nucleus	22.85	20.47
Bra004525.1-P	Field mustard	nucleus	26.97	20.45
Bra010548.1-P	Field mustard	nucleus	26.97	20.45
Bra031853.1-P	Field mustard	nucleus	23.22	20.39
Bra019247.1-P	Field mustard	nucleus	25.84	20.12
TraesCS7B01G120600.1	Wheat	nucleus	23.97	20.06
Bra014418.1-P	Field mustard	nucleus	23.22	20.0
Bra030696.1-P	Field mustard	nucleus	24.72	19.76
Bra039272.1-P	Field mustard	nucleus, plastid	26.59	19.72
Bra010884.1-P	Field mustard	nucleus	21.35	19.32
Bra024399.1-P	Field mustard	nucleus	22.1	19.28
Bra000429.1-P	Field mustard	nucleus	26.59	19.24
Bra035667.1-P	Field mustard	nucleus	24.34	18.9
Bra032891.1-P	Field mustard	nucleus	20.97	18.86
Bra027722.1-P	Field mustard	nucleus	22.85	18.83
Bra005181.1-P	Field mustard	nucleus	22.85	18.77
Bra010136.1-P	Field mustard	nucleus	25.84	18.75
Bra035873.1-P	Field mustard	nucleus	23.6	18.53
Bra017171.1-P	Field mustard	nucleus	21.35	18.45
Bra005725.1-P	Field mustard	nucleus	26.97	17.87
Bra028872.1-P	Field mustard	nucleus	26.97	17.73
Bra031588.1-P	Field mustard	nucleus	20.22	17.03
Bra009588.1-P	Field mustard	plastid	5.24	7.87

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra035956	EnsemblPlants:Bra035956.1	EnsemblPlants:Bra035956.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4F4F6	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF71	UniParc:UPI0002541FAD	InterPro:Znf_Dof	SEG:seg	:

Description

AT5G60850 (E=2e-078) OBP4 | OBP4; DNA binding / transcription factor

Coordinates

chrA09:+:2738593..2739396

Molecular Weight (calculated)

28648.0 Da

IEP (calculated)

7.553

GRAVY (calculated)

-0.760

Length

267 amino acids

Sequence
(BLAST)

001: MQDIHDYSMT GGGGGGGGGG RTGRFFGGGG GGDRRMRVHQ NNILNHHQSL KCPRCNSLNT KFCYYNNYNH SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR
101: KAKRSKSKQP PSSSSTSTAD KPMAQDGEEK PCSSESSSLP AGAATAAAAK GVMGADMHNI KLYGNGIEWS TLLGQGSSDG GVFEMGGFTA LSIDTTPFGF
201: GGNTVQQQFE DRTAQVDPTM EFEPLDWGSG GGDQTLFDLT STADHAYWSH QDQNDLTFHN SDSFSSF

Best Arabidopsis Sequence Match ( AT5G60850.1 )
(BLAST)

001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP

Arabidopsis Description

DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.