Factsheet for Bra027722.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000872.1-P
Bra018539.1-P
Bra032394.1-P
Bra036256.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64620.1	Bra032394.1-P	AT1G30490.1	21245844
AT1G64620.1	Bra000872.1-P	AT4G02590.1	21245844
AT1G64620.1	Bra018539.1-P	AT4G02590.1	21245844
AT1G64620.1	Bra036256.1-P	AT4G02590.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70840	Canola	nucleus	30.25	86.73
AT1G64620.1	Thale cress	nucleus	77.47	71.31
VIT_02s0025g02250.t01	Wine grape	nucleus	41.05	46.18
Bra019247.1-P	Field mustard	nucleus	42.28	39.94
Bra013758.1-P	Field mustard	nucleus	40.43	38.99
Bra010548.1-P	Field mustard	nucleus	41.67	38.35
Bra004525.1-P	Field mustard	nucleus	33.95	31.25
Bra037401.1-P	Field mustard	nucleus	27.16	29.53
Bra039272.1-P	Field mustard	nucleus, plastid	32.72	29.44
Bra014418.1-P	Field mustard	nucleus	28.09	29.35
Bra000429.1-P	Field mustard	nucleus	33.33	29.27
Bra020261.1-P	Field mustard	nucleus	20.99	28.57
Bra017906.1-P	Field mustard	nucleus	20.37	26.09
Bra009587.1-P	Field mustard	nucleus	14.2	25.99
Bra002504.1-P	Field mustard	nucleus	20.68	25.97
Bra012804.1-P	Field mustard	nucleus	19.14	25.73
Bra012277.1-P	Field mustard	nucleus	20.68	25.67
Bra006923.1-P	Field mustard	nucleus	19.14	25.62
Bra035873.1-P	Field mustard	nucleus	24.69	23.53
Bra010136.1-P	Field mustard	nucleus	26.23	23.1
Bra035956.1-P	Field mustard	nucleus	18.83	22.85
Bra013003.1-P	Field mustard	nucleus	20.68	22.79
Bra006675.1-P	Field mustard	nucleus	19.14	22.38
Bra035696.1-P	Field mustard	nucleus	17.59	22.27
Bra000008.1-P	Field mustard	nucleus	20.06	22.18
Bra029352.1-P	Field mustard	nucleus	18.83	21.94
Bra032891.1-P	Field mustard	nucleus	20.06	21.89
Bra017171.1-P	Field mustard	nucleus	20.68	21.68
Bra030089.1-P	Field mustard	nucleus	19.75	21.48
Bra010884.1-P	Field mustard	nucleus	19.44	21.36
Bra005181.1-P	Field mustard	nucleus	20.99	20.92
Bra031853.1-P	Field mustard	nucleus	19.14	20.39
Bra037822.1-P	Field mustard	nucleus	17.59	20.07
Bra007156.1-P	Field mustard	nucleus	19.75	19.57
Bra014752.1-P	Field mustard	nucleus	20.99	19.43
Bra024399.1-P	Field mustard	nucleus	18.21	19.28
Bra030696.1-P	Field mustard	nucleus	19.14	18.56
Bra035667.1-P	Field mustard	nucleus	19.14	18.02
Bra005725.1-P	Field mustard	nucleus	20.06	16.13
Bra028872.1-P	Field mustard	nucleus	19.44	15.52
Bra031588.1-P	Field mustard	nucleus	15.12	15.46
Bra009588.1-P	Field mustard	plastid	5.25	9.55

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra027722	EnsemblPlants:Bra027722.1	EnsemblPlants:Bra027722.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	InterPro:IPR003851	UniProt:M4EG09	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF78	UniParc:UPI00025422FA	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

AT1G64620 (E=6e-095) | Dof-type zinc finger domain-containing protein

Coordinates

chrA09:+:6646985..6647959

Molecular Weight (calculated)

34621.9 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.708

Length

324 amino acids

Sequence
(BLAST)

001: MNETCLKQPN PAAAAPVEEK KARPEKDHAL NCPRCNSLNT KFCYYNNYSL TQPRYFCKDC KRYWTQGGSL RNIPIGGGLR KNKRPSSSSS SSSNSNSSSS
101: SKKTLSVNNK TPPPPVQQLN LTSVENDHEA KAYSHGFGNA HEAKDLSSAF SQGFGIGHHH QSIPEFLQVV PSSMKSHALV STSSALELLG ISNSSTTSSN
201: SRPAFVTYPN VHDSSVYAAA SPGFGMSFPQ FQEFMRPPLG FPLDGGDPLR QQEGSSGTDI GRPLLPFESL KLPVSSSSTN SGGGGNGNDH KREKEEGEAD
301: NSVGFWNGML SAGDSAASAG GPWQ

Best Arabidopsis Sequence Match ( AT1G64620.1 )
(BLAST)

001: MDTAKWPQEF VVKPMNEIVT NTCLKQQSNP PSPATPVERK ARPEKDQALN CPRCNSLNTK FCYYNNYSLT QPRYFCKDCR RYWTAGGSLR NIPVGGGVRK
101: NKRSSSNSSS SSPSSSSSSK KPLFANNNTP TPPLPHLNPK IGEAAATKVQ DLTFSQGFGN AHEVKDLNLA FSQGFGIGHN HHSSIPEFLQ VVPSSSMKNN
201: PLVSTSSSLE LLGISSSSAS SNSRPAFMSY PNVHDSSVYT ASGFGLSYPQ FQEFMRPALG FSLDGGDPLR QEEGSSGTNN GRPLLPFESL LKLPVSSSST
301: NSGGNGNLKE NNDEHSDHEH EKEEGEADQS VGFWSGMLSA GASAAASGGS WQ

Arabidopsis Description

DOF1.8Dof zinc finger protein DOF1.8 [Source:UniProtKB/Swiss-Prot;Acc:Q84JQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.